Wall clock time and date at job start Mon Mar 30 2020 02:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46963 * 299.99499 * 5 4 2 7 7 C 1.52997 * 109.47092 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47497 * 59.99850 * 7 6 5 9 9 C 1.50699 * 109.47265 * 179.97438 * 7 6 5 10 10 H 1.08006 * 119.99785 * 120.00293 * 9 7 6 11 11 C 1.37870 * 120.00307 * 300.00039 * 9 7 6 12 12 N 1.31516 * 119.99935 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00488 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46969 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47485 * 119.99966 * 13 11 9 16 16 H 1.48500 * 109.46928 * 240.00133 * 13 11 9 17 17 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 20 20 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 4 2 1 22 22 H 1.08992 * 109.47399 * 59.99823 * 4 2 1 23 23 H 1.09000 * 109.47437 * 180.02562 * 5 4 2 24 24 H 1.09002 * 109.47508 * 59.99571 * 5 4 2 25 25 H 1.09002 * 109.47067 * 300.00341 * 6 5 4 26 26 H 1.09000 * 109.47312 * 180.02562 * 6 5 4 27 27 H 0.96999 * 120.00366 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.47075 * 299.99262 * 17 2 1 29 29 H 1.08996 * 109.47407 * 60.00219 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0804 -1.4417 0.0002 7 6 3.5704 -0.7204 -1.2490 8 1 3.9334 0.3074 -1.2488 9 6 4.0737 -1.4301 -2.4795 10 1 3.3724 -1.8408 -3.1908 11 6 5.4293 -1.5551 -2.6972 12 7 6.2833 -1.0545 -1.8313 13 14 6.0532 -2.4341 -4.2228 14 1 4.8989 -2.9015 -5.0317 15 1 6.8780 -1.4997 -5.0301 16 1 6.8788 -3.6006 -3.8191 17 6 2.0399 -0.7212 -1.2493 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5137 0.8900 20 1 -0.3635 0.5138 -0.8899 21 1 1.6767 -0.2075 2.1392 22 1 1.6766 -1.7489 1.2492 23 1 3.9334 -1.2350 2.1392 24 1 3.9330 0.3071 1.2497 25 1 3.7174 -2.4695 0.0000 26 1 5.1704 -1.4417 0.0006 27 1 7.2371 -1.1421 -1.9847 28 1 1.6766 -1.7489 -1.2493 29 1 1.6766 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259859858.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:17 Heat of formation + Delta-G solvation = -56.288565 kcal Electronic energy + Delta-G solvation = -9989.543512 eV Core-core repulsion = 8296.254409 eV Total energy + Delta-G solvation = -1693.289102 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.42302 -35.14434 -32.79111 -31.55836 -26.98620 -26.74196 -22.78599 -21.81703 -20.33751 -18.26120 -16.62931 -15.75793 -15.14063 -14.94957 -14.60994 -14.13497 -13.62351 -13.02377 -12.94648 -12.86067 -12.50827 -12.35210 -11.90451 -11.73416 -11.59723 -11.47138 -11.13150 -10.61508 -10.45328 -10.29698 -8.06836 -6.21608 1.38920 1.40288 1.52108 2.43316 3.18486 3.99664 4.12274 4.19731 4.52718 4.67904 4.79737 4.83632 4.93184 4.98639 5.07252 5.15173 5.18482 5.22311 5.35964 5.50943 5.54538 5.59428 5.65738 5.77920 6.06683 6.23049 6.43255 6.92069 7.46355 8.96947 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.074164 B = 0.014102 C = 0.012451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.453024 B = 1985.109249 C = 2248.345213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.054 0.946 4 C -0.101 4.101 5 C -0.115 4.115 6 C -0.104 4.104 7 C 0.042 3.958 8 H -0.011 1.011 9 C -0.535 4.535 10 H 0.049 0.951 11 C 0.009 3.991 12 N -0.918 5.918 13 Si 0.954 3.046 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.279 1.279 17 C -0.095 4.095 18 H 0.055 0.945 19 H 0.068 0.932 20 H 0.053 0.947 21 H 0.075 0.925 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.024 0.976 26 H 0.053 0.947 27 H 0.259 0.741 28 H 0.044 0.956 29 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 0.456 4.219 8.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.073 0.927 4 C -0.139 4.139 5 C -0.153 4.153 6 C -0.142 4.142 7 C 0.024 3.976 8 H 0.007 0.993 9 C -0.574 4.574 10 H 0.067 0.933 11 C -0.189 4.189 12 N -0.558 5.558 13 Si 0.779 3.221 14 H -0.192 1.192 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.132 4.132 18 H 0.074 0.926 19 H 0.087 0.913 20 H 0.072 0.928 21 H 0.094 0.906 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.493 0.472 4.244 8.625 hybrid contribution 0.860 -0.397 -0.946 1.339 sum -6.633 0.075 3.298 7.408 Atomic orbital electron populations 1.21766 0.93767 1.01917 1.01954 1.21161 0.96322 0.98718 0.94966 0.92718 1.21512 0.94543 1.00399 0.97410 1.21557 0.96548 0.99622 0.97569 1.21423 1.01238 0.96909 0.94646 1.18665 0.91689 0.94026 0.93267 0.99283 1.21692 0.91967 1.36303 1.07400 0.93292 1.25778 0.97311 0.96441 0.99371 1.70042 1.02026 1.46878 1.36852 0.85574 0.78288 0.78376 0.79840 1.19224 1.20561 1.20509 1.21554 0.96382 0.98818 0.96488 0.92615 0.91342 0.92811 0.90626 0.92326 0.92317 0.93830 0.95695 0.92793 0.93139 0.93714 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.19 71.98 0.66 -2.99 15 2 C -0.09 -3.21 2.72 -10.79 -0.03 -3.24 15 3 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 4 C -0.10 -3.32 5.20 30.59 0.16 -3.16 15 5 C -0.12 -4.53 5.92 30.60 0.18 -4.35 15 6 C -0.10 -5.14 4.98 30.59 0.15 -4.99 15 7 C 0.04 2.20 2.10 -11.52 -0.02 2.17 15 8 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 15 9 C -0.54 -30.82 8.56 25.60 0.22 -30.60 15 10 H 0.05 2.78 7.74 -2.91 -0.02 2.76 15 11 C 0.01 0.52 5.30 84.65 0.45 0.97 15 12 N -0.92 -54.80 11.32 21.44 0.24 -54.55 15 13 Si 0.95 44.85 29.54 68.60 2.03 46.88 15 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15 15 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 17 C -0.09 -4.06 4.43 30.61 0.14 -3.93 15 18 H 0.05 1.42 8.14 -2.39 -0.02 1.40 15 19 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 22 H 0.06 1.87 8.14 -2.39 -0.02 1.85 15 23 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.04 1.75 8.14 -2.39 -0.02 1.73 15 25 H 0.02 1.21 8.14 -2.39 -0.02 1.19 15 26 H 0.05 3.02 6.07 -2.39 -0.01 3.01 15 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 15 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 15 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 15 Total: -1.00 -61.25 230.42 5.25 -55.99 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 1.08 Total: 1.79 kcal Atomic # 6 Polarization: -52.01 SS G_CDS: 1.90 Total: -50.11 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.24 Total: -54.55 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -61.25 5.25 -55.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859858.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.295 kcal (2) G-P(sol) polarization free energy of solvation -61.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds