Wall clock time and date at job start Mon Mar 30 2020 02:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47058 * 2 1 4 4 C 1.53004 * 109.47305 * 240.00573 * 2 1 3 5 5 C 1.52997 * 109.47305 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47275 * 59.99320 * 5 4 2 7 7 C 1.52998 * 109.47303 * 300.00084 * 6 5 4 8 8 H 1.08995 * 109.47578 * 299.99989 * 7 6 5 9 9 C 1.50702 * 109.47304 * 179.97438 * 7 6 5 10 10 H 1.07994 * 120.00264 * 335.21916 * 9 7 6 11 11 C 1.37874 * 119.99892 * 155.21134 * 9 7 6 12 12 N 1.31520 * 120.00208 * 355.16846 * 11 9 7 13 13 Si 1.86800 * 119.99934 * 175.17050 * 11 9 7 14 14 H 1.48497 * 109.47455 * 60.00179 * 13 11 9 15 15 H 1.48497 * 109.47167 * 299.99774 * 13 11 9 16 16 H 1.48513 * 109.47053 * 180.02562 * 13 11 9 17 17 C 1.52995 * 109.47549 * 120.00105 * 2 1 3 18 18 H 1.08992 * 109.47477 * 300.00071 * 1 2 3 19 19 H 1.09004 * 109.47320 * 60.00161 * 1 2 3 20 20 H 1.09005 * 109.46760 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46595 * 299.99711 * 4 2 1 22 22 H 1.08995 * 109.47657 * 59.99642 * 4 2 1 23 23 H 1.09001 * 109.47613 * 179.97438 * 5 4 2 24 24 H 1.09005 * 109.46760 * 299.99885 * 5 4 2 25 25 H 1.08998 * 109.47434 * 180.02562 * 6 5 4 26 26 H 1.09005 * 109.46990 * 60.00066 * 6 5 4 27 27 H 0.96997 * 119.99709 * 5.19425 * 12 11 9 28 28 H 1.09005 * 109.47026 * 59.99875 * 17 2 1 29 29 H 1.09001 * 109.46650 * 300.00573 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4414 -0.0004 7 6 3.5706 -0.7202 1.2488 8 1 3.9335 0.3076 1.2487 9 6 4.0730 -1.4306 2.4793 10 1 4.3332 -2.4776 2.4300 11 6 4.2005 -0.7438 3.6680 12 7 3.9751 0.5514 3.7067 13 14 4.6934 -1.6529 5.2237 14 1 6.0241 -2.2824 5.0286 15 1 3.6877 -2.7037 5.5226 16 1 4.7597 -0.6952 6.3568 17 6 2.0401 -0.7212 1.2492 18 1 -0.3634 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.6767 -1.7489 -1.2493 22 1 1.6767 -0.2073 -2.1393 23 1 3.9334 -1.2347 -2.1394 24 1 3.9329 0.3073 -1.2498 25 1 5.1705 -1.4406 -0.0004 26 1 3.7176 -2.4693 -0.0002 27 1 3.6467 1.0102 2.9178 28 1 1.6767 -1.7489 1.2492 29 1 1.6766 -0.2074 2.1391 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259859860.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:19 Heat of formation + Delta-G solvation = -46.141619 kcal Electronic energy + Delta-G solvation = -10013.557442 eV Core-core repulsion = 8320.708345 eV Total energy + Delta-G solvation = -1692.849097 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.93539 -33.28674 -31.58858 -29.31297 -25.67483 -24.28877 -21.34338 -20.26802 -18.88892 -16.57447 -14.34627 -13.83641 -13.69217 -13.63242 -13.16204 -12.85309 -11.75179 -11.45298 -11.29291 -10.97755 -10.90905 -10.61557 -10.22874 -10.08911 -9.98754 -9.85485 -9.35231 -8.95759 -8.30606 -8.17033 -6.26636 -3.96294 3.47097 3.48921 3.67583 4.58983 5.34193 5.38854 5.51458 5.58877 5.82828 5.95250 6.11856 6.24873 6.30258 6.38611 6.46757 6.53828 6.57520 6.72132 6.78036 6.90809 7.04405 7.14744 7.31215 7.62080 7.78765 8.36809 8.53440 8.98380 9.75747 11.12106 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.063700 B = 0.014655 C = 0.013098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.451902 B = 1910.089197 C = 2137.212878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.060 0.940 4 C -0.106 4.106 5 C -0.120 4.120 6 C -0.102 4.102 7 C 0.029 3.971 8 H 0.029 0.971 9 C -0.592 4.592 10 H 0.046 0.954 11 C 0.018 3.982 12 N -0.916 5.916 13 Si 1.065 2.935 14 H -0.289 1.289 15 H -0.289 1.289 16 H -0.283 1.283 17 C -0.098 4.098 18 H 0.050 0.950 19 H 0.043 0.957 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.270 0.730 28 H 0.042 0.958 29 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -1.877 -6.620 7.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.078 0.922 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.140 4.140 7 C 0.010 3.990 8 H 0.047 0.953 9 C -0.630 4.630 10 H 0.064 0.936 11 C -0.186 4.186 12 N -0.552 5.552 13 Si 0.894 3.106 14 H -0.216 1.216 15 H -0.215 1.215 16 H -0.209 1.209 17 C -0.136 4.136 18 H 0.069 0.931 19 H 0.062 0.938 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.309 -1.658 -5.010 6.229 hybrid contribution -0.430 -0.270 -1.631 1.709 sum -3.739 -1.928 -6.642 7.862 Atomic orbital electron populations 1.21824 0.96668 1.00993 1.00547 1.21267 0.94125 0.99656 0.96640 0.92191 1.21509 0.95964 0.99940 0.96903 1.21597 0.95417 1.00429 0.98303 1.21541 0.99221 0.98617 0.94618 1.18866 0.90913 0.96429 0.92762 0.95316 1.21987 1.47650 0.97927 0.95467 0.93595 1.25779 0.95066 0.96146 1.01585 1.70785 1.42664 1.08216 1.33578 0.83609 0.76256 0.75007 0.75765 1.21569 1.21545 1.20872 1.21766 0.99346 0.98144 0.94371 0.93085 0.93835 0.93261 0.92733 0.93556 0.93654 0.92852 0.93439 0.93691 0.91862 0.93874 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.19 37.16 0.34 -1.96 15 2 C -0.10 -1.86 2.72 -90.62 -0.25 -2.10 15 3 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 4 C -0.11 -1.81 5.20 -26.73 -0.14 -1.95 15 5 C -0.12 -2.18 5.92 -26.73 -0.16 -2.34 15 6 C -0.10 -2.23 5.18 -26.73 -0.14 -2.37 15 7 C 0.03 0.74 1.83 -91.74 -0.17 0.57 15 8 H 0.03 0.79 6.67 -51.93 -0.35 0.44 15 9 C -0.59 -16.91 8.31 -34.44 -0.29 -17.19 15 10 H 0.05 1.31 7.81 -52.49 -0.41 0.90 15 11 C 0.02 0.52 5.45 -17.82 -0.10 0.42 15 12 N -0.92 -28.03 13.63 55.43 0.76 -27.27 15 13 Si 1.06 25.62 29.91 -169.99 -5.08 20.54 15 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 17 C -0.10 -2.25 4.47 -26.71 -0.12 -2.37 15 18 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 19 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 23 H 0.04 0.73 8.14 -51.93 -0.42 0.30 15 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 25 H 0.05 1.05 8.14 -51.93 -0.42 0.62 15 26 H 0.04 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.27 8.22 6.66 -40.82 -0.27 7.95 15 28 H 0.04 0.99 8.14 -51.93 -0.42 0.56 15 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 15 LS Contribution 231.98 15.07 3.50 3.50 Total: -1.00 -29.60 231.98 -6.74 -36.34 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -4.90 Total: -3.80 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: -1.01 Total: -29.31 kcal Atomic # 7 Polarization: -28.03 SS G_CDS: 0.76 Total: -27.27 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.60 -6.74 -36.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859860.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.797 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds