Wall clock time and date at job start Mon Mar 30 2020 02:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47058 * 2 1 4 4 C 1.53004 * 109.47305 * 240.00573 * 2 1 3 5 5 C 1.52997 * 109.47305 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47275 * 59.99320 * 5 4 2 7 7 C 1.52998 * 109.47303 * 300.00084 * 6 5 4 8 8 H 1.08995 * 109.47578 * 299.99989 * 7 6 5 9 9 C 1.50702 * 109.47304 * 179.97438 * 7 6 5 10 10 H 1.07994 * 120.00264 * 335.21916 * 9 7 6 11 11 C 1.37874 * 119.99892 * 155.21134 * 9 7 6 12 12 N 1.31520 * 120.00208 * 355.16846 * 11 9 7 13 13 Si 1.86800 * 119.99934 * 175.17050 * 11 9 7 14 14 H 1.48497 * 109.47455 * 60.00179 * 13 11 9 15 15 H 1.48497 * 109.47167 * 299.99774 * 13 11 9 16 16 H 1.48513 * 109.47053 * 180.02562 * 13 11 9 17 17 C 1.52995 * 109.47549 * 120.00105 * 2 1 3 18 18 H 1.08992 * 109.47477 * 300.00071 * 1 2 3 19 19 H 1.09004 * 109.47320 * 60.00161 * 1 2 3 20 20 H 1.09005 * 109.46760 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46595 * 299.99711 * 4 2 1 22 22 H 1.08995 * 109.47657 * 59.99642 * 4 2 1 23 23 H 1.09001 * 109.47613 * 179.97438 * 5 4 2 24 24 H 1.09005 * 109.46760 * 299.99885 * 5 4 2 25 25 H 1.08998 * 109.47434 * 180.02562 * 6 5 4 26 26 H 1.09005 * 109.46990 * 60.00066 * 6 5 4 27 27 H 0.96997 * 119.99709 * 5.19425 * 12 11 9 28 28 H 1.09005 * 109.47026 * 59.99875 * 17 2 1 29 29 H 1.09001 * 109.46650 * 300.00573 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4414 -0.0004 7 6 3.5706 -0.7202 1.2488 8 1 3.9335 0.3076 1.2487 9 6 4.0730 -1.4306 2.4793 10 1 4.3332 -2.4776 2.4300 11 6 4.2005 -0.7438 3.6680 12 7 3.9751 0.5514 3.7067 13 14 4.6934 -1.6529 5.2237 14 1 6.0241 -2.2824 5.0286 15 1 3.6877 -2.7037 5.5226 16 1 4.7597 -0.6952 6.3568 17 6 2.0401 -0.7212 1.2492 18 1 -0.3634 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.6767 -1.7489 -1.2493 22 1 1.6767 -0.2073 -2.1393 23 1 3.9334 -1.2347 -2.1394 24 1 3.9329 0.3073 -1.2498 25 1 5.1705 -1.4406 -0.0004 26 1 3.7176 -2.4693 -0.0002 27 1 3.6467 1.0102 2.9178 28 1 1.6767 -1.7489 1.2492 29 1 1.6766 -0.2074 2.1391 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259859860.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:19 Heat of formation + Delta-G solvation = -62.709657 kcal Electronic energy + Delta-G solvation = -10014.275887 eV Core-core repulsion = 8320.708345 eV Total energy + Delta-G solvation = -1693.567542 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.61997 -35.31193 -33.21448 -31.16816 -27.19191 -26.39208 -23.07939 -21.98390 -20.54509 -18.72133 -15.96708 -15.69555 -15.60569 -15.29407 -14.79777 -14.40158 -13.37413 -13.14273 -13.07186 -12.75755 -12.59236 -12.26190 -11.97283 -11.81047 -11.68583 -11.49229 -11.21756 -10.75960 -10.43836 -10.22812 -8.58606 -6.28739 1.50888 1.59126 1.78257 2.57776 3.21086 3.87279 4.01687 4.06960 4.35672 4.49189 4.62995 4.67093 4.82082 4.86545 4.92852 4.98449 5.04471 5.08648 5.21341 5.32992 5.38402 5.42360 5.56806 5.68235 5.84340 6.17443 6.26704 6.69958 7.51532 8.80158 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.063700 B = 0.014655 C = 0.013098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.451902 B = 1910.089197 C = 2137.212878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 H 0.048 0.952 4 C -0.101 4.101 5 C -0.115 4.115 6 C -0.099 4.099 7 C 0.020 3.980 8 H -0.003 1.003 9 C -0.608 4.608 10 H 0.041 0.959 11 C -0.035 4.035 12 N -0.941 5.941 13 Si 1.111 2.889 14 H -0.271 1.271 15 H -0.272 1.272 16 H -0.284 1.284 17 C -0.088 4.088 18 H 0.042 0.958 19 H 0.072 0.928 20 H 0.057 0.943 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.257 0.743 28 H 0.041 0.959 29 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 -2.779 -7.881 9.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.067 0.933 4 C -0.138 4.138 5 C -0.153 4.153 6 C -0.137 4.137 7 C 0.002 3.998 8 H 0.015 0.985 9 C -0.646 4.646 10 H 0.059 0.941 11 C -0.232 4.232 12 N -0.579 5.579 13 Si 0.933 3.067 14 H -0.197 1.197 15 H -0.197 1.197 16 H -0.210 1.210 17 C -0.126 4.126 18 H 0.061 0.939 19 H 0.091 0.909 20 H 0.076 0.924 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -3.949 -2.569 -6.299 7.866 hybrid contribution -0.210 0.006 -1.262 1.280 sum -4.160 -2.563 -7.561 9.003 Atomic orbital electron populations 1.21766 0.94136 1.01918 1.01661 1.21220 0.96303 0.98589 0.95431 0.93319 1.21500 0.94840 1.00549 0.96923 1.21563 0.96453 0.99958 0.97310 1.21448 0.98591 0.98712 0.94913 1.18911 0.92635 0.94667 0.93624 0.98477 1.22425 1.47246 0.97903 0.97021 0.94070 1.27235 0.94739 0.96175 1.05097 1.70906 1.44639 1.09275 1.33102 0.83019 0.77215 0.74349 0.72119 1.19674 1.19695 1.20982 1.21556 0.97504 0.98128 0.95457 0.93862 0.90910 0.92421 0.91927 0.90169 0.90521 0.93301 0.94520 0.93472 0.93260 0.94058 0.96632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 9.19 71.98 0.66 -3.42 15 2 C -0.10 -3.52 2.72 -10.79 -0.03 -3.55 15 3 H 0.05 1.87 8.14 -2.38 -0.02 1.85 15 4 C -0.10 -3.11 5.20 30.59 0.16 -2.95 15 5 C -0.12 -3.92 5.92 30.59 0.18 -3.74 15 6 C -0.10 -4.26 5.18 30.59 0.16 -4.10 15 7 C 0.02 1.05 1.83 -11.52 -0.02 1.03 15 8 H 0.00 -0.17 6.67 -2.39 -0.02 -0.19 15 9 C -0.61 -35.38 8.31 25.60 0.21 -35.17 15 10 H 0.04 2.37 7.81 -2.91 -0.02 2.35 15 11 C -0.04 -2.08 5.45 84.65 0.46 -1.61 15 12 N -0.94 -59.35 13.63 21.45 0.29 -59.06 15 13 Si 1.11 51.73 29.91 68.60 2.05 53.79 15 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 16 H -0.28 -13.22 7.11 99.48 0.71 -12.51 15 17 C -0.09 -4.10 4.47 30.61 0.14 -3.97 15 18 H 0.04 1.33 8.14 -2.39 -0.02 1.31 15 19 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.06 1.61 8.14 -2.38 -0.02 1.59 15 21 H 0.06 1.86 8.14 -2.38 -0.02 1.84 15 22 H 0.08 2.01 8.14 -2.39 -0.02 1.99 15 23 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 24 H 0.05 1.70 8.14 -2.38 -0.02 1.68 15 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 15 26 H 0.05 1.98 8.14 -2.38 -0.02 1.96 15 27 H 0.26 16.40 6.66 -92.71 -0.62 15.78 15 28 H 0.04 1.88 8.14 -2.38 -0.02 1.87 15 29 H 0.01 0.78 8.14 -2.39 -0.02 0.76 15 Total: -1.00 -64.65 231.98 5.50 -59.15 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: 1.23 Total: 3.60 kcal Atomic # 6 Polarization: -59.40 SS G_CDS: 1.92 Total: -57.48 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.29 Total: -59.06 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 2.05 Total: 53.79 kcal Total: -64.65 5.50 -59.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859860.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.556 kcal (2) G-P(sol) polarization free energy of solvation -64.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds