Wall clock time and date at job start Mon Mar 30 2020 01:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46906 * 2 1 4 4 C 1.50697 * 109.47095 * 119.99653 * 2 1 3 5 5 H 1.07994 * 120.00247 * 114.49099 * 4 2 1 6 6 C 1.37879 * 120.00008 * 294.48483 * 4 2 1 7 7 N 1.31515 * 120.00154 * 164.76493 * 6 4 2 8 8 Si 1.86808 * 120.00036 * 344.77002 * 6 4 2 9 9 H 1.48498 * 109.46841 * 269.99280 * 8 6 4 10 10 H 1.48499 * 109.47138 * 149.99840 * 8 6 4 11 11 H 1.48496 * 109.46780 * 29.99557 * 8 6 4 12 12 C 1.50694 * 109.47332 * 239.99911 * 2 1 3 13 13 C 1.31550 * 123.20063 * 119.99984 * 12 2 1 14 14 C 1.51931 * 107.37542 * 180.47881 * 13 12 2 15 15 C 1.54853 * 101.66890 * 15.15866 * 14 13 12 16 16 O 1.35240 * 123.19532 * 299.70407 * 12 2 1 17 17 H 1.09005 * 109.47150 * 53.66392 * 1 2 3 18 18 H 1.09002 * 109.46753 * 173.65500 * 1 2 3 19 19 H 1.09000 * 109.47471 * 293.66022 * 1 2 3 20 20 H 0.97003 * 119.99701 * 354.90550 * 7 6 4 21 21 H 1.08003 * 126.31475 * 0.44186 * 13 12 2 22 22 H 1.08995 * 110.98579 * 133.25596 * 14 13 12 23 23 H 1.08996 * 110.98676 * 257.03264 * 14 13 12 24 24 H 1.09006 * 110.96972 * 94.26750 * 15 14 13 25 25 H 1.08994 * 110.97561 * 218.00282 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5778 -1.6373 1.1340 6 6 1.7955 -0.1766 2.4795 7 7 1.9577 -0.9186 3.5532 8 14 1.2442 1.6004 2.6468 9 1 2.4352 2.4786 2.7707 10 1 0.3957 1.7436 3.8570 11 1 0.4635 1.9915 1.4457 12 6 2.0324 -0.7104 -1.2304 13 6 2.7914 -0.1327 -2.1363 14 6 3.0735 -1.1635 -3.2162 15 6 2.0079 -2.2430 -2.9047 16 8 1.7505 -2.0042 -1.5053 17 1 -0.3634 0.6089 -0.8279 18 1 -0.3633 -1.0214 -0.1136 19 1 -0.3634 0.4124 0.9413 20 1 2.1718 -1.8605 3.4640 21 1 3.1478 0.8867 -2.1164 22 1 2.9218 -0.7402 -4.2090 23 1 4.0806 -1.5681 -3.1161 24 1 1.1095 -2.0883 -3.5024 25 1 2.4098 -3.2442 -3.0600 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259874088.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:31 Heat of formation + Delta-G solvation = -25.950138 kcal Electronic energy + Delta-G solvation = -9664.748836 eV Core-core repulsion = 7836.942213 eV Total energy + Delta-G solvation = -1827.806624 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.97200 -34.38349 -31.72525 -31.32037 -27.96409 -24.67286 -22.47103 -20.81551 -18.98421 -17.37669 -15.90337 -15.50919 -14.28527 -13.40687 -13.24507 -12.55378 -12.25903 -11.99041 -11.59805 -11.38491 -11.11656 -10.66521 -10.54302 -10.24615 -10.04718 -9.53019 -8.84978 -8.30142 -7.48292 -6.41623 -4.05213 3.04214 3.42695 3.43920 3.59316 4.19305 4.51753 5.07460 5.28850 5.33932 5.44598 5.79078 6.02044 6.16376 6.31582 6.41608 6.47638 6.66719 6.75194 7.02365 7.33395 7.34580 7.94115 8.20775 8.42311 8.92854 9.62434 10.95707 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.073023 B = 0.015273 C = 0.014426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.347815 B = 1832.892514 C = 1940.410019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.061 3.939 3 H 0.046 0.954 4 C -0.591 4.591 5 H 0.059 0.941 6 C 0.031 3.969 7 N -0.906 5.906 8 Si 1.042 2.958 9 H -0.285 1.285 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.134 3.866 13 C -0.345 4.345 14 C -0.110 4.110 15 C 0.039 3.961 16 O -0.305 6.305 17 H 0.024 0.976 18 H 0.049 0.951 19 H 0.054 0.946 20 H 0.269 0.731 21 H 0.137 0.863 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 1.739 -10.717 10.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.042 3.958 3 H 0.063 0.937 4 C -0.629 4.629 5 H 0.078 0.922 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.870 3.130 9 H -0.212 1.212 10 H -0.211 1.211 11 H -0.195 1.195 12 C 0.088 3.912 13 C -0.365 4.365 14 C -0.148 4.148 15 C -0.037 4.037 16 O -0.219 6.219 17 H 0.043 0.957 18 H 0.068 0.932 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.154 0.846 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.463 2.707 -9.451 9.940 hybrid contribution 0.606 -1.222 -1.347 1.917 sum -0.858 1.485 -10.798 10.933 Atomic orbital electron populations 1.22141 0.97679 1.00379 0.99534 1.18188 0.92736 0.94845 0.90040 0.93664 1.21876 1.39973 1.10751 0.90299 0.92233 1.25793 0.94259 1.05431 0.91858 1.70790 1.44160 1.08360 1.30687 0.84133 0.77252 0.75536 0.76087 1.21209 1.21082 1.19525 1.22019 0.91630 0.82333 0.95171 1.23305 1.11165 1.01115 1.00865 1.21894 0.98926 0.95054 0.98879 1.23876 0.97905 0.99712 0.82193 1.86931 1.83612 1.26214 1.25115 0.95652 0.93235 0.92705 0.92116 0.84566 0.91257 0.91367 0.91474 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.46 37.16 0.31 -2.88 15 2 C 0.06 1.52 2.20 -92.93 -0.20 1.31 15 3 H 0.05 1.09 6.66 -51.93 -0.35 0.75 15 4 C -0.59 -17.27 8.83 -34.44 -0.30 -17.58 15 5 H 0.06 1.92 7.99 -52.49 -0.42 1.50 15 6 C 0.03 0.92 5.33 -17.82 -0.09 0.82 15 7 N -0.91 -28.33 13.70 55.43 0.76 -27.57 15 8 Si 1.04 25.08 26.17 -169.99 -4.45 20.63 15 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 11 H -0.27 -5.88 5.53 56.52 0.31 -5.57 15 12 C 0.13 3.08 5.33 -36.16 -0.19 2.89 15 13 C -0.35 -6.85 10.82 -35.55 -0.38 -7.24 15 14 C -0.11 -1.78 7.15 -26.30 -0.19 -1.97 15 15 C 0.04 0.63 8.13 38.13 0.31 0.94 15 16 O -0.31 -6.87 11.12 -17.42 -0.19 -7.07 15 17 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 18 H 0.05 1.14 8.12 -51.93 -0.42 0.71 15 19 H 0.05 1.25 5.06 -51.93 -0.26 0.99 15 20 H 0.27 8.43 8.73 -40.82 -0.36 8.07 15 21 H 0.14 2.51 8.06 -52.48 -0.42 2.09 15 22 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.07 0.97 8.14 -51.93 -0.42 0.54 15 25 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 LS Contribution 212.31 15.07 3.20 3.20 Total: -1.00 -31.40 212.31 -4.66 -36.05 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -3.23 Total: -1.56 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -0.74 Total: -23.69 kcal Atomic # 7 Polarization: -28.33 SS G_CDS: 0.76 Total: -27.57 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.19 Total: -7.07 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -4.45 Total: 20.63 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -31.40 -4.66 -36.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259874088.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.104 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds