Wall clock time and date at job start Mon Mar 30 2020 02:28:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86796 * 119.99724 * 2 1
4 4 H 1.48503 * 109.47250 * 240.00185 * 3 2 1
5 5 H 1.48502 * 109.47391 * 359.97438 * 3 2 1
6 6 H 1.48502 * 109.47418 * 119.99780 * 3 2 1
7 7 C 1.37870 * 119.99944 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99649 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00232 * 0.02562 * 7 2 1
10 10 H 1.09003 * 110.63849 * 298.30619 * 9 7 2
11 11 C 1.55160 * 110.71993 * 174.97438 * 9 7 2
12 12 C 1.54910 * 101.58122 * 206.13269 * 11 9 7
13 13 N 1.47425 * 104.83231 * 37.00939 * 12 11 9
14 14 C 1.34771 * 125.64767 * 156.13676 * 13 12 11
15 15 O 1.21278 * 120.00143 * 179.69193 * 14 13 12
16 16 C 1.47026 * 108.70074 * 335.87083 * 13 12 11
17 17 H 0.97002 * 120.00253 * 0.02562 * 1 2 3
18 18 H 1.08991 * 111.00600 * 324.20887 * 11 9 7
19 19 H 1.09002 * 111.00329 * 88.06100 * 11 9 7
20 20 H 1.09001 * 110.36852 * 278.17238 * 12 11 9
21 21 H 1.08998 * 110.36449 * 155.84885 * 12 11 9
22 22 H 1.08001 * 120.00087 * 359.69058 * 14 13 12
23 23 H 1.09004 * 109.87531 * 120.47707 * 16 13 12
24 24 H 1.09000 * 109.87938 * 241.63960 * 16 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2840 2.7465 -0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1939 0.0010
9 6 1.2510 -2.4991 0.0005
10 1 0.6397 -2.5898 0.8984
11 6 2.2286 -3.6973 -0.1259
12 6 1.3211 -4.7719 -0.7752
13 7 0.4654 -4.0253 -1.7152
14 6 -0.1435 -4.5403 -2.8017
15 8 -0.8319 -3.8309 -3.5043
16 6 0.3812 -2.6274 -1.2676
17 1 -0.4850 0.8400 -0.0004
18 1 3.0678 -3.4500 -0.7760
19 1 2.5782 -4.0215 0.8543
20 1 0.7122 -5.2631 -0.0162
21 1 1.9245 -5.5044 -1.3112
22 1 -0.0184 -5.5847 -3.0466
23 1 0.7607 -1.9655 -2.0461
24 1 -0.6532 -2.3744 -1.0348
RHF calculation, no. of doubly occupied orbitals= 31
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260002221.mol2 24
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:28:38
Heat of formation + Delta-G solvation = -42.116494 kcal
Electronic energy + Delta-G solvation = -9715.731369 eV
Core-core repulsion = 7821.797808 eV
Total energy + Delta-G solvation = -1893.933560 eV
No. of doubly occupied orbitals = 31
Molecular weight
(most abundant/longest-lived isotopes) = 169.084 amu
Computer time = 0.09 seconds
Orbital eigenvalues (eV)
-38.86501 -36.52536 -32.94884 -30.48482 -28.07842 -25.17424 -22.83321 -20.19503
-19.28149 -16.66593 -16.30454 -15.24933 -14.62997 -14.42520 -13.31241 -12.50025
-12.43789 -11.97250 -11.71202 -11.32750 -10.92550 -10.62633 -10.58120 -9.88807
-9.39523 -9.27206 -9.04203 -8.50431 -7.81478 -6.09790 -4.14783 3.29808
3.32071 3.35613 3.37002 3.88558 4.39363 5.19487 5.29376 5.47043
5.73982 5.87415 6.21552 6.48711 6.71794 6.86145 6.98317 7.08874
7.50465 7.68186 7.88445 8.27876 8.32750 8.74289 8.88851 9.51064
11.00106
Molecular weight = 169.08amu
Principal moments of inertia in cm(-1)
A = 0.063233 B = 0.014832 C = 0.012959
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 442.702237 B = 1887.333421 C = 2160.163768
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.887 5.887
2 C 0.064 3.936
3 Si 0.896 3.104
4 H -0.276 1.276
5 H -0.287 1.287
6 H -0.276 1.276
7 C -0.521 4.521
8 H 0.060 0.940
9 C 0.044 3.956
10 H 0.038 0.962
11 C -0.129 4.129
12 C 0.099 3.901
13 N -0.623 5.623
14 C 0.495 3.505
15 O -0.570 6.570
16 C 0.122 3.878
17 H 0.264 0.736
18 H 0.066 0.934
19 H 0.066 0.934
20 H 0.060 0.940
21 H 0.062 0.938
22 H 0.115 0.885
23 H 0.059 0.941
24 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.295 -7.580 0.109 8.266
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.524 5.524
2 C -0.140 4.140
3 Si 0.723 3.277
4 H -0.202 1.202
5 H -0.212 1.212
6 H -0.202 1.202
7 C -0.559 4.559
8 H 0.079 0.921
9 C 0.025 3.975
10 H 0.057 0.943
11 C -0.168 4.168
12 C -0.024 4.024
13 N -0.358 5.358
14 C 0.265 3.735
15 O -0.448 6.448
16 C 0.000 4.000
17 H 0.074 0.926
18 H 0.085 0.915
19 H 0.084 0.916
20 H 0.078 0.922
21 H 0.080 0.920
22 H 0.131 0.869
23 H 0.078 0.922
24 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 2.714 -7.108 -0.342 7.616
hybrid contribution 0.427 0.846 0.028 0.948
sum 3.142 -6.262 -0.314 7.013
Atomic orbital electron populations
1.69938 1.05973 1.27157 1.49333 1.25042 0.94911 0.99409 0.94589
0.86596 0.79559 0.82860 0.78642 1.20178 1.21233 1.20170 1.20985
0.92892 0.89881 1.52137 0.92150 1.19732 0.92187 0.92538 0.93082
0.94344 1.22871 0.98324 0.96145 0.99411 1.22312 0.92781 0.95226
0.92118 1.49480 1.47521 1.13408 1.25435 1.22042 0.79326 0.92680
0.79469 1.90670 1.40149 1.63633 1.50308 1.22386 1.01187 0.78217
0.98179 0.92606 0.91547 0.91551 0.92201 0.91994 0.86937 0.92225
0.92144
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.50 12.41 55.43 0.69 -24.81 14
2 C 0.06 1.74 5.33 -17.82 -0.10 1.65 14
3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 14
4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14
5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 14
6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14
7 C -0.52 -13.92 8.40 -34.44 -0.29 -14.21 14
8 H 0.06 1.57 7.78 -52.49 -0.41 1.16 14
9 C 0.04 1.05 2.88 -89.94 -0.26 0.79 14
10 H 0.04 0.99 8.14 -51.93 -0.42 0.56 14
11 C -0.13 -2.43 6.50 -24.58 -0.16 -2.59 14
12 C 0.10 1.60 7.21 -2.53 -0.02 1.58 14
13 N -0.62 -12.51 3.33 -175.60 -0.58 -13.09 14
14 C 0.50 9.41 12.25 54.05 0.66 10.07 14
15 O -0.57 -13.64 17.50 5.56 0.10 -13.54 14
16 C 0.12 3.00 5.48 -3.07 -0.02 2.98 14
17 H 0.26 7.29 8.31 -40.82 -0.34 6.95 14
18 H 0.07 1.26 8.04 -51.93 -0.42 0.84 14
19 H 0.07 1.11 8.14 -51.93 -0.42 0.68 14
20 H 0.06 0.88 8.14 -51.93 -0.42 0.45 14
21 H 0.06 0.80 8.14 -51.93 -0.42 0.37 14
22 H 0.11 1.51 8.06 -52.49 -0.42 1.09 14
23 H 0.06 1.64 7.81 -51.93 -0.41 1.23 14
24 H 0.06 1.64 8.01 -51.93 -0.42 1.22 14
LS Contribution 212.73 15.07 3.21 3.21
Total: -1.00 -31.00 212.73 -4.69 -35.68
By element:
Atomic # 1 Polarization: -0.91 SS G_CDS: -2.90 Total: -3.81 kcal
Atomic # 6 Polarization: 0.45 SS G_CDS: -0.18 Total: 0.27 kcal
Atomic # 7 Polarization: -38.01 SS G_CDS: 0.10 Total: -37.90 kcal
Atomic # 8 Polarization: -13.64 SS G_CDS: 0.10 Total: -13.54 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal
Total LS contribution 3.21 Total: 3.21 kcal
Total: -31.00 -4.69 -35.68 kcal
The number of atoms in the molecule is 24
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260002221.mol2 24
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.432 kcal
(2) G-P(sol) polarization free energy of solvation -30.999 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.431 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.116 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.09 seconds