Wall clock time and date at job start Mon Mar 30 2020 02:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99724 * 2 1 4 4 H 1.48503 * 109.47250 * 240.00185 * 3 2 1 5 5 H 1.48502 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47418 * 119.99780 * 3 2 1 7 7 C 1.37870 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99649 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00232 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.63849 * 298.30619 * 9 7 2 11 11 C 1.55160 * 110.71993 * 174.97438 * 9 7 2 12 12 C 1.54910 * 101.58122 * 206.13269 * 11 9 7 13 13 N 1.47425 * 104.83231 * 37.00939 * 12 11 9 14 14 C 1.34771 * 125.64767 * 156.13676 * 13 12 11 15 15 O 1.21278 * 120.00143 * 179.69193 * 14 13 12 16 16 C 1.47026 * 108.70074 * 335.87083 * 13 12 11 17 17 H 0.97002 * 120.00253 * 0.02562 * 1 2 3 18 18 H 1.08991 * 111.00600 * 324.20887 * 11 9 7 19 19 H 1.09002 * 111.00329 * 88.06100 * 11 9 7 20 20 H 1.09001 * 110.36852 * 278.17238 * 12 11 9 21 21 H 1.08998 * 110.36449 * 155.84885 * 12 11 9 22 22 H 1.08001 * 120.00087 * 359.69058 * 14 13 12 23 23 H 1.09004 * 109.87531 * 120.47707 * 16 13 12 24 24 H 1.09000 * 109.87938 * 241.63960 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6397 -2.5898 0.8984 11 6 2.2286 -3.6973 -0.1259 12 6 1.3211 -4.7719 -0.7752 13 7 0.4654 -4.0253 -1.7152 14 6 -0.1435 -4.5403 -2.8017 15 8 -0.8319 -3.8309 -3.5043 16 6 0.3812 -2.6274 -1.2676 17 1 -0.4850 0.8400 -0.0004 18 1 3.0678 -3.4500 -0.7760 19 1 2.5782 -4.0215 0.8543 20 1 0.7122 -5.2631 -0.0162 21 1 1.9245 -5.5044 -1.3112 22 1 -0.0184 -5.5847 -3.0466 23 1 0.7607 -1.9655 -2.0461 24 1 -0.6532 -2.3744 -1.0348 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260002221.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:38 Heat of formation + Delta-G solvation = -42.116494 kcal Electronic energy + Delta-G solvation = -9715.731369 eV Core-core repulsion = 7821.797808 eV Total energy + Delta-G solvation = -1893.933560 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.86501 -36.52536 -32.94884 -30.48482 -28.07842 -25.17424 -22.83321 -20.19503 -19.28149 -16.66593 -16.30454 -15.24933 -14.62997 -14.42520 -13.31241 -12.50025 -12.43789 -11.97250 -11.71202 -11.32750 -10.92550 -10.62633 -10.58120 -9.88807 -9.39523 -9.27206 -9.04203 -8.50431 -7.81478 -6.09790 -4.14783 3.29808 3.32071 3.35613 3.37002 3.88558 4.39363 5.19487 5.29376 5.47043 5.73982 5.87415 6.21552 6.48711 6.71794 6.86145 6.98317 7.08874 7.50465 7.68186 7.88445 8.27876 8.32750 8.74289 8.88851 9.51064 11.00106 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.063233 B = 0.014832 C = 0.012959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.702237 B = 1887.333421 C = 2160.163768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.044 3.956 10 H 0.038 0.962 11 C -0.129 4.129 12 C 0.099 3.901 13 N -0.623 5.623 14 C 0.495 3.505 15 O -0.570 6.570 16 C 0.122 3.878 17 H 0.264 0.736 18 H 0.066 0.934 19 H 0.066 0.934 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.115 0.885 23 H 0.059 0.941 24 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -7.580 0.109 8.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.079 0.921 9 C 0.025 3.975 10 H 0.057 0.943 11 C -0.168 4.168 12 C -0.024 4.024 13 N -0.358 5.358 14 C 0.265 3.735 15 O -0.448 6.448 16 C 0.000 4.000 17 H 0.074 0.926 18 H 0.085 0.915 19 H 0.084 0.916 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.131 0.869 23 H 0.078 0.922 24 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.714 -7.108 -0.342 7.616 hybrid contribution 0.427 0.846 0.028 0.948 sum 3.142 -6.262 -0.314 7.013 Atomic orbital electron populations 1.69938 1.05973 1.27157 1.49333 1.25042 0.94911 0.99409 0.94589 0.86596 0.79559 0.82860 0.78642 1.20178 1.21233 1.20170 1.20985 0.92892 0.89881 1.52137 0.92150 1.19732 0.92187 0.92538 0.93082 0.94344 1.22871 0.98324 0.96145 0.99411 1.22312 0.92781 0.95226 0.92118 1.49480 1.47521 1.13408 1.25435 1.22042 0.79326 0.92680 0.79469 1.90670 1.40149 1.63633 1.50308 1.22386 1.01187 0.78217 0.98179 0.92606 0.91547 0.91551 0.92201 0.91994 0.86937 0.92225 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 12.41 55.43 0.69 -24.81 14 2 C 0.06 1.74 5.33 -17.82 -0.10 1.65 14 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 14 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 14 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 7 C -0.52 -13.92 8.40 -34.44 -0.29 -14.21 14 8 H 0.06 1.57 7.78 -52.49 -0.41 1.16 14 9 C 0.04 1.05 2.88 -89.94 -0.26 0.79 14 10 H 0.04 0.99 8.14 -51.93 -0.42 0.56 14 11 C -0.13 -2.43 6.50 -24.58 -0.16 -2.59 14 12 C 0.10 1.60 7.21 -2.53 -0.02 1.58 14 13 N -0.62 -12.51 3.33 -175.60 -0.58 -13.09 14 14 C 0.50 9.41 12.25 54.05 0.66 10.07 14 15 O -0.57 -13.64 17.50 5.56 0.10 -13.54 14 16 C 0.12 3.00 5.48 -3.07 -0.02 2.98 14 17 H 0.26 7.29 8.31 -40.82 -0.34 6.95 14 18 H 0.07 1.26 8.04 -51.93 -0.42 0.84 14 19 H 0.07 1.11 8.14 -51.93 -0.42 0.68 14 20 H 0.06 0.88 8.14 -51.93 -0.42 0.45 14 21 H 0.06 0.80 8.14 -51.93 -0.42 0.37 14 22 H 0.11 1.51 8.06 -52.49 -0.42 1.09 14 23 H 0.06 1.64 7.81 -51.93 -0.41 1.23 14 24 H 0.06 1.64 8.01 -51.93 -0.42 1.22 14 LS Contribution 212.73 15.07 3.21 3.21 Total: -1.00 -31.00 212.73 -4.69 -35.68 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -2.90 Total: -3.81 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -0.18 Total: 0.27 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.10 Total: -37.90 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.10 Total: -13.54 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -31.00 -4.69 -35.68 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002221.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.432 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds