Wall clock time and date at job start Mon Mar 30 2020 02:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.48645 * 60.03164 * 9 7 2 11 11 C 1.53301 * 109.48402 * 180.02562 * 9 7 2 12 12 C 1.51436 * 108.24413 * 173.77070 * 11 9 7 13 13 O 1.20762 * 121.10772 * 130.99580 * 12 11 9 14 14 C 1.51428 * 117.77770 * 310.97203 * 12 11 9 15 15 C 1.53298 * 108.24274 * 49.02709 * 14 12 11 16 16 N 1.46825 * 109.48395 * 299.99919 * 9 7 2 17 17 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 18 18 H 1.08999 * 109.70758 * 293.46032 * 11 9 7 19 19 H 1.09000 * 109.70875 * 54.07875 * 11 9 7 20 20 H 1.09005 * 109.71238 * 289.33919 * 14 12 11 21 21 H 1.09002 * 109.71093 * 168.71401 * 14 12 11 22 22 H 1.09005 * 109.48487 * 186.22773 * 15 14 12 23 23 H 1.09000 * 109.49579 * 66.19718 * 15 14 12 24 24 H 1.00905 * 111.00160 * 298.99934 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6251 -2.5615 -0.8787 11 6 2.2470 -3.6646 0.0179 12 6 1.4679 -4.9530 0.1796 13 8 1.6621 -5.8954 -0.5502 14 6 0.4376 -5.0205 1.2873 15 6 -0.4433 -3.7689 1.2002 16 7 0.4064 -2.5716 1.2103 17 1 -0.4850 0.8401 -0.0041 18 1 2.7970 -3.6832 -0.9229 19 1 2.9428 -3.5489 0.8489 20 1 0.9392 -5.0504 2.2546 21 1 -0.1772 -5.9121 1.1637 22 1 -1.1208 -3.7410 2.0537 23 1 -1.0225 -3.7952 0.2772 24 1 0.9654 -2.5329 2.0494 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260018179.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:09 Heat of formation + Delta-G solvation = -64.629085 kcal Electronic energy + Delta-G solvation = -9794.258560 eV Core-core repulsion = 7899.348781 eV Total energy + Delta-G solvation = -1894.909780 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.77643 -37.86071 -34.55901 -32.05286 -30.37316 -27.23354 -23.83580 -22.88553 -20.39920 -18.54343 -16.83460 -16.37670 -16.15917 -15.82868 -15.45065 -15.17466 -14.23936 -13.84393 -13.26488 -13.00755 -12.82088 -12.57866 -12.29008 -11.97174 -11.72923 -11.25258 -10.52547 -10.29938 -8.71914 -7.97287 -6.19248 0.93114 1.46987 1.50141 1.59848 2.49402 3.20051 3.25833 3.88667 4.00704 4.17551 4.35697 4.45063 4.55796 4.92418 4.93541 5.07022 5.14619 5.40278 5.79366 6.16588 6.46919 6.61054 7.04554 7.14125 7.54092 9.06428 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.081019 B = 0.014516 C = 0.013027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.516393 B = 1928.482448 C = 2148.850676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.036 3.964 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.554 4.554 8 H 0.057 0.943 9 C 0.233 3.767 10 H 0.001 0.999 11 C -0.190 4.190 12 C 0.361 3.639 13 O -0.511 6.511 14 C -0.194 4.194 15 C 0.068 3.932 16 N -0.666 5.666 17 H 0.256 0.744 18 H 0.067 0.933 19 H 0.106 0.894 20 H 0.122 0.878 21 H 0.096 0.904 22 H 0.097 0.903 23 H 0.046 0.954 24 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 -4.488 4.624 6.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.168 4.168 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.592 4.592 8 H 0.076 0.924 9 C 0.124 3.876 10 H 0.019 0.981 11 C -0.230 4.230 12 C 0.241 3.759 13 O -0.389 6.389 14 C -0.234 4.234 15 C -0.063 4.063 16 N -0.295 5.295 17 H 0.065 0.935 18 H 0.086 0.914 19 H 0.124 0.876 20 H 0.140 0.860 21 H 0.114 0.886 22 H 0.115 0.885 23 H 0.065 0.935 24 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.544 -4.442 3.986 5.992 hybrid contribution 0.957 0.267 -0.080 0.997 sum 1.501 -4.174 3.906 5.911 Atomic orbital electron populations 1.70226 1.07125 1.26497 1.47708 1.25681 0.95395 1.01913 0.93773 0.85640 0.79147 0.80162 0.77307 1.19233 1.21243 1.20663 1.21311 0.92672 0.91141 1.54083 0.92433 1.18899 0.88296 0.90783 0.89587 0.98133 1.23118 1.00835 0.95294 1.03783 1.25543 0.81241 0.86956 0.82163 1.90308 1.64049 1.40441 1.44119 1.23111 0.98505 1.02643 0.99158 1.22073 0.95861 0.86089 1.02231 1.60461 1.27394 1.36810 1.04807 0.93473 0.91439 0.87606 0.86043 0.88568 0.88510 0.93550 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.78 12.77 21.45 0.27 -49.51 14 2 C 0.04 1.95 5.39 84.66 0.46 2.40 14 3 Si 0.95 42.14 29.54 68.60 2.03 44.17 14 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 14 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 14 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 14 7 C -0.55 -29.04 8.74 25.60 0.22 -28.82 14 8 H 0.06 2.95 7.74 -2.91 -0.02 2.92 14 9 C 0.23 11.13 2.29 44.28 0.10 11.23 14 10 H 0.00 0.04 8.10 -2.39 -0.02 0.02 14 11 C -0.19 -7.64 5.54 30.18 0.17 -7.47 14 12 C 0.36 13.54 6.80 29.57 0.20 13.74 14 13 O -0.51 -21.82 17.91 -1.45 -0.03 -21.85 14 14 C -0.19 -5.73 6.31 30.18 0.19 -5.54 14 15 C 0.07 2.34 6.57 86.42 0.57 2.91 14 16 N -0.67 -28.50 5.74 -494.75 -2.84 -31.34 14 17 H 0.26 13.84 8.31 -92.71 -0.77 13.07 14 18 H 0.07 2.82 8.14 -2.39 -0.02 2.80 14 19 H 0.11 3.83 8.14 -2.39 -0.02 3.81 14 20 H 0.12 2.90 8.14 -2.38 -0.02 2.88 14 21 H 0.10 2.55 8.14 -2.39 -0.02 2.53 14 22 H 0.10 2.80 8.14 -2.38 -0.02 2.79 14 23 H 0.05 1.76 8.10 -2.39 -0.02 1.74 14 24 H 0.33 13.12 8.76 -89.69 -0.79 12.33 14 Total: -1.00 -61.17 210.63 1.75 -59.43 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.41 Total: 10.64 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 1.91 Total: -11.54 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -2.57 Total: -80.84 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.03 Total: -21.85 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -61.17 1.75 -59.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018179.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.201 kcal (2) G-P(sol) polarization free energy of solvation -61.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds