Wall clock time and date at job start Mon Mar 30 2020 02:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99994 * 2 1 4 4 H 1.48499 * 109.47170 * 269.99867 * 3 2 1 5 5 H 1.48497 * 109.47018 * 30.00187 * 3 2 1 6 6 H 1.48499 * 109.46961 * 150.00088 * 3 2 1 7 7 C 1.37879 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00046 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99742 * 179.97438 * 7 2 1 10 10 C 1.50702 * 109.46632 * 180.02562 * 9 7 2 11 11 C 1.36077 * 126.46404 * 274.99627 * 10 9 7 12 12 C 1.41139 * 104.19890 * 179.97438 * 11 10 9 13 13 O 1.22001 * 126.98787 * 180.02562 * 12 11 10 14 14 O 1.34200 * 106.02457 * 0.02562 * 12 11 10 15 15 N 1.20963 * 110.91590 * 359.97438 * 14 12 11 16 16 H 0.96998 * 124.10121 * 179.97438 * 15 14 12 17 17 H 0.97002 * 119.99752 * 0.02562 * 1 2 3 18 18 H 1.08994 * 109.46812 * 60.00248 * 9 7 2 19 19 H 1.08999 * 109.47358 * 300.00224 * 9 7 2 20 20 H 1.07995 * 127.90051 * 359.96449 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0138 -2.6149 0.0001 11 6 4.1939 -3.4089 1.0904 12 6 4.6724 -4.6252 0.5577 13 8 4.9702 -5.6319 1.1791 14 8 4.7330 -4.4491 -0.7713 15 7 4.3682 -3.3370 -1.0767 16 1 4.3360 -3.0063 -1.9880 17 1 -0.4850 0.8401 -0.0004 18 1 3.8752 -0.6797 0.8894 19 1 3.8746 -0.6808 -0.8905 20 1 4.0124 -3.1643 2.1265 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122552.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:57 Heat of formation + Delta-G solvation = -2.126574 kcal Electronic energy + Delta-G solvation = -9311.820085 eV Core-core repulsion = 7283.787523 eV Total energy + Delta-G solvation = -2028.032562 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.053 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -45.99154 -38.95664 -36.66556 -34.55273 -32.12414 -30.96772 -25.47249 -24.18547 -21.97413 -20.37777 -19.31038 -18.69921 -17.20790 -16.26727 -16.09241 -15.04410 -14.73162 -14.46803 -14.14449 -13.69954 -12.98545 -12.49210 -12.11238 -11.71737 -11.31985 -11.14392 -10.78926 -9.20745 -8.30287 -6.41261 0.39441 1.26323 1.45561 1.49453 1.58749 1.76334 2.37748 2.52137 3.05509 3.70521 4.25701 4.28995 4.91362 5.06529 5.18748 5.41436 5.84465 6.16633 6.53223 6.66472 6.92385 7.23381 8.85539 Molecular weight = 169.05amu Principal moments of inertia in cm(-1) A = 0.092404 B = 0.012350 C = 0.012010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 302.943561 B = 2266.642059 C = 2330.858732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.260 1.260 5 H -0.292 1.292 6 H -0.232 1.232 7 C -0.536 4.536 8 H 0.031 0.969 9 C 0.037 3.963 10 C 0.213 3.787 11 C -0.406 4.406 12 C 0.447 3.553 13 O -0.550 6.550 14 O -0.067 6.067 15 N -0.482 5.482 16 H 0.480 0.520 17 H 0.270 0.730 18 H 0.075 0.925 19 H 0.071 0.929 20 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.020 1.987 -3.749 9.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.184 1.184 5 H -0.218 1.218 6 H -0.154 1.154 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.001 4.001 10 C 0.093 3.907 11 C -0.434 4.434 12 C 0.304 3.696 13 O -0.446 6.446 14 O -0.090 6.090 15 N -0.143 5.143 16 H 0.335 0.665 17 H 0.079 0.921 18 H 0.093 0.907 19 H 0.089 0.911 20 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.121 1.392 -3.799 9.978 hybrid contribution -0.403 0.495 -0.147 0.655 sum 8.717 1.887 -3.946 9.753 Atomic orbital electron populations 1.70044 1.08713 1.28711 1.50857 1.25947 0.95522 1.03541 0.93294 0.85639 0.79847 0.77427 0.79669 1.18441 1.21819 1.15447 1.20919 0.89838 0.93604 1.53076 0.95015 1.18645 0.94715 0.85053 1.01680 1.22225 0.85980 0.96388 0.86129 1.22314 1.24243 0.95070 1.01793 1.19945 0.80954 0.90338 0.78335 1.90958 1.57596 1.36349 1.59737 1.84490 1.73665 1.19361 1.31444 1.41249 1.60440 1.01800 1.10791 0.66518 0.92082 0.90711 0.91108 0.80526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.36 13.96 21.45 0.30 -54.06 14 2 C 0.02 0.80 5.47 84.66 0.46 1.27 14 3 Si 0.95 37.09 27.47 68.60 1.88 38.98 14 4 H -0.26 -9.51 7.11 99.48 0.71 -8.81 14 5 H -0.29 -11.80 7.11 99.48 0.71 -11.09 14 6 H -0.23 -7.85 6.54 99.48 0.65 -7.20 14 7 C -0.54 -26.76 9.65 25.60 0.25 -26.51 14 8 H 0.03 1.84 7.98 -2.91 -0.02 1.81 14 9 C 0.04 1.37 4.60 29.10 0.13 1.50 14 10 C 0.21 7.41 6.42 41.66 0.27 7.68 14 11 C -0.41 -15.52 11.08 22.48 0.25 -15.27 14 12 C 0.45 18.06 8.67 68.53 0.59 18.65 14 13 O -0.55 -25.67 18.07 17.76 0.32 -25.34 14 14 O -0.07 -2.24 11.25 93.14 1.05 -1.19 14 15 N -0.48 -13.99 6.70 -48.08 -0.32 -14.31 14 16 H 0.48 9.61 8.96 -92.71 -0.83 8.77 14 17 H 0.27 14.50 8.31 -92.71 -0.77 13.73 14 18 H 0.07 2.64 7.20 -2.39 -0.02 2.62 14 19 H 0.07 2.19 7.57 -2.39 -0.02 2.17 14 20 H 0.18 6.52 8.06 -2.91 -0.02 6.49 14 Total: -1.00 -65.67 192.18 5.57 -60.11 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.38 Total: 8.50 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 1.95 Total: -12.68 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -0.02 Total: -68.37 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: 1.37 Total: -26.54 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 1.88 Total: 38.98 kcal Total: -65.67 5.57 -60.11 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122552.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.979 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds