Wall clock time and date at job start Mon Mar 30 2020 01:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86797 * 120.00188 * 2 1 4 4 H 1.48498 * 109.46966 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.46982 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.46990 * 239.99995 * 3 2 1 7 7 C 1.40314 * 119.99499 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99246 * 180.02562 * 7 2 1 9 9 C 1.40066 * 120.00191 * 359.97438 * 7 2 1 10 10 C 1.35037 * 119.99862 * 187.93295 * 9 7 2 11 11 C 1.51507 * 121.21383 * 6.03866 * 10 9 7 12 12 C 1.53813 * 107.86049 * 131.51113 * 11 10 9 13 13 O 1.42899 * 109.18519 * 52.52429 * 12 11 10 14 14 C 1.42893 * 114.49715 * 294.92078 * 13 12 11 15 15 C 1.51513 * 121.21308 * 186.32266 * 10 9 7 16 16 H 0.97003 * 119.99936 * 0.02562 * 1 2 3 17 17 H 1.07998 * 119.99871 * 7.93002 * 9 7 2 18 18 H 1.09001 * 109.73777 * 251.22974 * 11 10 9 19 19 H 1.08999 * 109.73825 * 11.93368 * 11 10 9 20 20 H 1.08993 * 109.67339 * 292.53710 * 12 11 10 21 21 H 1.08998 * 109.46282 * 172.37957 * 12 11 10 22 22 H 1.09001 * 109.50392 * 304.98996 * 14 13 12 23 23 H 1.08996 * 109.53509 * 184.89424 * 14 13 12 24 24 H 1.09000 * 109.73307 * 348.06301 * 15 10 9 25 25 H 1.08995 * 109.73908 * 108.76784 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 1.2760 2.7464 -0.0006 5 1 3.0947 1.6963 1.2125 6 1 3.0947 1.6963 -1.2125 7 6 2.0084 -1.2152 0.0005 8 1 3.0884 -1.2152 0.0010 9 6 1.3080 -2.4282 0.0016 10 6 1.9735 -3.5919 0.1636 11 6 3.4549 -3.6117 0.4808 12 6 3.6711 -4.5699 1.6644 13 8 3.0663 -5.8296 1.3653 14 6 1.6435 -5.7886 1.2390 15 6 1.2674 -4.9256 0.0284 16 1 -0.4850 0.8401 -0.0004 17 1 0.2357 -2.4327 -0.1270 18 1 4.0126 -3.9626 -0.3875 19 1 3.7867 -2.6095 0.7519 20 1 3.2165 -4.1521 2.5625 21 1 4.7397 -4.7092 1.8284 22 1 1.2103 -5.3579 2.1417 23 1 1.2609 -6.7995 1.0983 24 1 0.1887 -4.7705 0.0078 25 1 1.5865 -5.4197 -0.8893 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260140201.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:17 Heat of formation + Delta-G solvation = -58.922971 kcal Electronic energy + Delta-G solvation = -9504.619842 eV Core-core repulsion = 7675.383409 eV Total energy + Delta-G solvation = -1829.236433 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.00803 -34.44601 -32.37237 -30.28328 -28.20049 -24.39018 -22.66640 -21.17503 -17.74330 -16.36507 -15.40881 -15.14913 -14.39940 -13.80367 -13.24419 -12.74909 -12.27255 -11.90727 -11.29315 -11.15332 -11.06466 -10.41113 -10.35940 -9.99516 -9.50052 -9.35675 -8.91506 -8.74550 -7.41233 -6.75574 -4.22168 2.96704 3.07469 3.11314 3.84648 3.97081 4.67382 5.38607 5.87654 6.05739 6.11561 6.23122 6.27119 6.40830 6.54252 6.83112 6.90201 7.15222 7.20756 7.22702 7.44445 7.89444 8.03507 8.43175 8.67189 9.07957 9.27179 10.27810 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.081252 B = 0.012733 C = 0.011463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.523129 B = 2198.546945 C = 2442.034865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.074 0.926 9 C 0.064 3.936 10 C -0.402 4.402 11 C -0.066 4.066 12 C 0.067 3.933 13 O -0.398 6.398 14 C 0.069 3.931 15 C -0.068 4.068 16 H 0.281 0.719 17 H 0.079 0.921 18 H 0.033 0.967 19 H 0.066 0.934 20 H 0.040 0.960 21 H 0.071 0.929 22 H 0.040 0.960 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -2.368 1.774 3.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.490 4.490 8 H 0.093 0.907 9 C 0.044 3.956 10 C -0.406 4.406 11 C -0.103 4.103 12 C -0.009 4.009 13 O -0.318 6.318 14 C -0.008 4.008 15 C -0.106 4.106 16 H 0.091 0.909 17 H 0.097 0.903 18 H 0.052 0.948 19 H 0.085 0.915 20 H 0.059 0.941 21 H 0.089 0.911 22 H 0.058 0.942 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.440 -2.369 1.754 3.826 hybrid contribution 0.086 1.118 -0.004 1.122 sum 2.526 -1.250 1.751 3.318 Atomic orbital electron populations 1.69568 1.07713 1.29538 1.37955 1.26145 0.94797 1.01747 0.91774 0.86324 0.79970 0.80166 0.79943 1.20445 1.18950 1.18936 1.19632 0.94781 0.90690 1.43897 0.90747 1.19669 0.96113 0.91379 0.88449 1.20851 0.94409 0.92265 1.33062 1.20726 0.96297 0.97912 0.95413 1.22700 0.95783 0.84713 0.97735 1.87674 1.20619 1.31364 1.92120 1.22560 0.81225 0.98793 0.98232 1.20652 0.98239 0.95842 0.95854 0.90863 0.90320 0.94800 0.91548 0.94121 0.91104 0.94200 0.91111 0.93200 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.94 12.88 55.57 0.72 -21.22 15 2 C 0.07 1.86 5.50 -17.26 -0.09 1.76 15 3 Si 0.91 19.26 29.56 -169.99 -5.03 14.23 15 4 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 5 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 15 7 C -0.46 -12.50 8.52 -38.12 -0.32 -12.83 15 8 H 0.07 1.97 5.93 -52.49 -0.31 1.66 15 9 C 0.06 1.75 9.05 -40.03 -0.36 1.38 15 10 C -0.40 -10.05 5.54 -99.69 -0.55 -10.60 15 11 C -0.07 -1.51 5.96 -27.06 -0.16 -1.67 15 12 C 0.07 1.36 6.86 37.58 0.26 1.62 15 13 O -0.40 -8.38 10.68 -35.23 -0.38 -8.76 15 14 C 0.07 1.35 6.85 37.34 0.26 1.61 15 15 C -0.07 -1.50 6.26 -27.30 -0.17 -1.67 15 16 H 0.28 6.84 8.29 -40.82 -0.34 6.50 15 17 H 0.08 2.24 7.40 -52.49 -0.39 1.85 15 18 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.07 1.53 5.87 -51.93 -0.30 1.23 15 20 H 0.04 0.81 8.13 -51.93 -0.42 0.39 15 21 H 0.07 1.24 8.14 -51.93 -0.42 0.81 15 22 H 0.04 0.77 8.13 -51.93 -0.42 0.35 15 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.05 1.06 7.99 -51.93 -0.41 0.64 15 25 H 0.04 0.83 8.14 -51.93 -0.42 0.40 15 LS Contribution 213.29 15.07 3.21 3.21 Total: -1.00 -27.84 213.29 -5.71 -33.55 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -3.09 Total: -0.62 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -1.15 Total: -20.40 kcal Atomic # 7 Polarization: -21.94 SS G_CDS: 0.72 Total: -21.22 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.38 Total: -8.76 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -27.84 -5.71 -33.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260140201.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.373 kcal (2) G-P(sol) polarization free energy of solvation -27.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds