Wall clock time and date at job start Mon Mar 30 2020 01:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86797 * 120.00188 * 2 1 4 4 H 1.48498 * 109.46966 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.46982 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.46990 * 239.99995 * 3 2 1 7 7 C 1.40314 * 119.99499 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99246 * 180.02562 * 7 2 1 9 9 C 1.40066 * 120.00191 * 359.97438 * 7 2 1 10 10 C 1.35037 * 119.99862 * 187.93295 * 9 7 2 11 11 C 1.51507 * 121.21383 * 6.03866 * 10 9 7 12 12 C 1.53813 * 107.86049 * 131.51113 * 11 10 9 13 13 O 1.42899 * 109.18519 * 52.52429 * 12 11 10 14 14 C 1.42893 * 114.49715 * 294.92078 * 13 12 11 15 15 C 1.51513 * 121.21308 * 186.32266 * 10 9 7 16 16 H 0.97003 * 119.99936 * 0.02562 * 1 2 3 17 17 H 1.07998 * 119.99871 * 7.93002 * 9 7 2 18 18 H 1.09001 * 109.73777 * 251.22974 * 11 10 9 19 19 H 1.08999 * 109.73825 * 11.93368 * 11 10 9 20 20 H 1.08993 * 109.67339 * 292.53710 * 12 11 10 21 21 H 1.08998 * 109.46282 * 172.37957 * 12 11 10 22 22 H 1.09001 * 109.50392 * 304.98996 * 14 13 12 23 23 H 1.08996 * 109.53509 * 184.89424 * 14 13 12 24 24 H 1.09000 * 109.73307 * 348.06301 * 15 10 9 25 25 H 1.08995 * 109.73908 * 108.76784 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 1.2760 2.7464 -0.0006 5 1 3.0947 1.6963 1.2125 6 1 3.0947 1.6963 -1.2125 7 6 2.0084 -1.2152 0.0005 8 1 3.0884 -1.2152 0.0010 9 6 1.3080 -2.4282 0.0016 10 6 1.9735 -3.5919 0.1636 11 6 3.4549 -3.6117 0.4808 12 6 3.6711 -4.5699 1.6644 13 8 3.0663 -5.8296 1.3653 14 6 1.6435 -5.7886 1.2390 15 6 1.2674 -4.9256 0.0284 16 1 -0.4850 0.8401 -0.0004 17 1 0.2357 -2.4327 -0.1270 18 1 4.0126 -3.9626 -0.3875 19 1 3.7867 -2.6095 0.7519 20 1 3.2165 -4.1521 2.5625 21 1 4.7397 -4.7092 1.8284 22 1 1.2103 -5.3579 2.1417 23 1 1.2609 -6.7995 1.0983 24 1 0.1887 -4.7705 0.0078 25 1 1.5865 -5.4197 -0.8893 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260140201.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:17 Heat of formation + Delta-G solvation = -75.941030 kcal Electronic energy + Delta-G solvation = -9505.357801 eV Core-core repulsion = 7675.383409 eV Total energy + Delta-G solvation = -1829.974391 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.70103 -36.38252 -34.27750 -31.97728 -30.11771 -26.29124 -24.38929 -22.95670 -19.64699 -18.35900 -17.15767 -16.78416 -16.14013 -15.48713 -15.11345 -14.54488 -14.06088 -13.66278 -13.01695 -12.92048 -12.81093 -12.21241 -12.03989 -11.84917 -11.37136 -11.07727 -10.83739 -10.50866 -9.42437 -8.69254 -6.25530 1.25116 1.36493 1.48798 1.93224 2.20671 3.10421 3.35565 4.27451 4.37327 4.43932 4.58155 4.67491 4.72908 4.83125 5.00898 5.12137 5.24957 5.26464 5.37733 5.53924 5.93813 6.39797 6.41665 6.63424 7.05172 7.22338 8.36447 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.081252 B = 0.012733 C = 0.011463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.523129 B = 2198.546945 C = 2442.034865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.025 3.975 3 Si 0.986 3.014 4 H -0.268 1.268 5 H -0.258 1.258 6 H -0.259 1.259 7 C -0.491 4.491 8 H 0.076 0.924 9 C 0.031 3.969 10 C -0.400 4.400 11 C -0.070 4.070 12 C 0.071 3.929 13 O -0.403 6.403 14 C 0.071 3.929 15 C -0.074 4.074 16 H 0.289 0.711 17 H 0.053 0.947 18 H 0.035 0.965 19 H 0.058 0.942 20 H 0.040 0.960 21 H 0.105 0.895 22 H 0.041 0.959 23 H 0.107 0.893 24 H 0.049 0.951 25 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -2.502 2.247 4.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.521 4.521 8 H 0.094 0.906 9 C 0.011 3.989 10 C -0.403 4.403 11 C -0.107 4.107 12 C -0.006 4.006 13 O -0.323 6.323 14 C -0.006 4.006 15 C -0.111 4.111 16 H 0.099 0.901 17 H 0.071 0.929 18 H 0.054 0.946 19 H 0.077 0.923 20 H 0.059 0.941 21 H 0.123 0.877 22 H 0.059 0.941 23 H 0.125 0.875 24 H 0.068 0.932 25 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.532 -2.525 2.228 4.880 hybrid contribution -0.286 1.041 -0.175 1.094 sum 3.245 -1.484 2.053 4.117 Atomic orbital electron populations 1.69636 1.09260 1.31001 1.38589 1.27067 0.95643 1.05292 0.90785 0.85190 0.78635 0.75345 0.80168 1.19181 1.18205 1.18354 1.19837 0.94970 0.91617 1.45630 0.90609 1.19706 0.95124 0.92925 0.91136 1.21425 0.95922 0.92949 1.30014 1.20774 0.94614 0.98521 0.96810 1.22729 0.97856 0.83847 0.96129 1.87682 1.21136 1.31452 1.91982 1.22635 0.80841 1.00279 0.96820 1.20735 0.98073 0.94893 0.97450 0.90064 0.92865 0.94617 0.92331 0.94125 0.87747 0.94095 0.87539 0.93214 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.64 12.88 21.89 0.28 -46.36 15 2 C 0.02 1.30 5.50 85.37 0.47 1.77 15 3 Si 0.99 39.21 29.56 68.60 2.03 41.23 15 4 H -0.27 -10.01 7.11 99.48 0.71 -9.31 15 5 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 7 C -0.49 -27.17 8.52 23.22 0.20 -26.97 15 8 H 0.08 4.06 5.93 -2.91 -0.02 4.04 15 9 C 0.03 1.75 9.05 21.98 0.20 1.95 15 10 C -0.40 -19.97 5.54 -16.67 -0.09 -20.06 15 11 C -0.07 -3.12 5.96 30.38 0.18 -2.93 15 12 C 0.07 2.68 6.86 72.26 0.50 3.18 15 13 O -0.40 -15.76 10.68 -148.98 -1.59 -17.35 15 14 C 0.07 2.61 6.85 72.10 0.49 3.10 15 15 C -0.07 -3.18 6.26 30.23 0.19 -2.99 15 16 H 0.29 14.19 8.29 -92.71 -0.77 13.43 15 17 H 0.05 3.18 7.40 -2.91 -0.02 3.16 15 18 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 19 H 0.06 2.68 5.87 -2.39 -0.01 2.67 15 20 H 0.04 1.54 8.13 -2.39 -0.02 1.52 15 21 H 0.10 3.27 8.14 -2.39 -0.02 3.25 15 22 H 0.04 1.50 8.13 -2.39 -0.02 1.48 15 23 H 0.11 3.19 8.14 -2.39 -0.02 3.17 15 24 H 0.05 2.10 7.99 -2.39 -0.02 2.08 15 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 15 Total: -1.00 -59.13 213.29 4.02 -55.12 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.16 Total: 10.32 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 2.13 Total: -42.96 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.28 Total: -46.36 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -1.59 Total: -17.35 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.23 kcal Total: -59.13 4.02 -55.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260140201.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.823 kcal (2) G-P(sol) polarization free energy of solvation -59.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds