Wall clock time and date at job start Mon Mar 30 2020 01:43:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30695 * 1
3 3 Si 1.86800 * 119.99570 * 2 1
4 4 H 1.48507 * 109.46748 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47527 * 300.00016 * 3 2 1
6 6 H 1.48502 * 109.47096 * 60.00311 * 3 2 1
7 7 C 1.40306 * 120.00009 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99598 * 180.02562 * 7 2 1
9 9 C 1.40069 * 120.00134 * 359.97438 * 7 2 1
10 10 C 1.35034 * 120.00060 * 185.63901 * 9 7 2
11 11 C 1.50705 * 119.99720 * 354.53011 * 10 9 7
12 12 H 1.08994 * 109.87209 * 4.16208 * 11 10 9
13 13 C 1.54105 * 109.87684 * 125.16999 * 11 10 9
14 14 C 1.54816 * 104.18690 * 121.45388 * 13 11 10
15 15 C 1.54998 * 102.09209 * 20.88122 * 14 13 11
16 16 O 1.43744 * 109.87898 * 242.99741 * 11 10 9
17 17 H 0.96993 * 120.00390 * 359.97438 * 1 2 3
18 18 H 1.07995 * 120.00062 * 5.63588 * 9 7 2
19 19 H 1.07994 * 120.00583 * 174.25852 * 10 9 7
20 20 H 1.08995 * 110.48603 * 240.13090 * 13 11 10
21 21 H 1.08999 * 110.48637 * 2.64644 * 13 11 10
22 22 H 1.08999 * 110.90327 * 139.08011 * 14 13 11
23 23 H 1.08996 * 110.90295 * 262.68347 * 14 13 11
24 24 H 1.08991 * 110.61960 * 81.47495 * 15 14 13
25 25 H 1.08996 * 110.61426 * 204.32195 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3069 0.0000 0.0000
3 14 2.2408 1.6178 0.0000
4 1 3.7009 1.3465 0.0006
5 1 1.8821 2.3965 -1.2125
6 1 1.8821 2.3964 1.2126
7 6 2.0085 -1.2151 -0.0005
8 1 3.0885 -1.2150 -0.0001
9 6 1.3082 -2.4281 -0.0005
10 6 1.9785 -3.5947 0.1138
11 6 3.4855 -3.6006 0.1174
12 1 3.8600 -2.5773 0.0937
13 6 4.0037 -4.3192 1.3783
14 6 4.8661 -5.4802 0.8259
15 6 5.1898 -4.9903 -0.6085
16 8 3.9742 -4.3295 -1.0211
17 1 -0.4850 0.8400 0.0004
18 1 0.2321 -2.4304 -0.0920
19 1 1.4348 -4.5231 0.2072
20 1 4.6128 -3.6439 1.9791
21 1 3.1713 -4.7058 1.9663
22 1 5.7778 -5.6000 1.4111
23 1 4.2969 -6.4094 0.8004
24 1 6.0230 -4.2878 -0.5953
25 1 5.4113 -5.8344 -1.2615
RHF calculation, no. of doubly occupied orbitals= 31
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260269393.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:43:03
Heat of formation + Delta-G solvation = -49.235739 kcal
Electronic energy + Delta-G solvation = -9415.026554 eV
Core-core repulsion = 7586.210191 eV
Total energy + Delta-G solvation = -1828.816363 eV
No. of doubly occupied orbitals = 31
Molecular weight
(most abundant/longest-lived isotopes) = 168.089 amu
Computer time = 0.12 seconds
Orbital eigenvalues (eV)
-38.37533 -34.29088 -31.67073 -31.09707 -27.67771 -24.78837 -21.86449 -20.60040
-18.85313 -16.59782 -15.60555 -14.98154 -14.44163 -14.09227 -12.88674 -12.78377
-12.43183 -11.68828 -11.32971 -10.95837 -10.76428 -10.61944 -10.38212 -10.12292
-9.76789 -9.58542 -9.37831 -8.26420 -7.64463 -6.74932 -4.27712 2.94229
3.10160 3.16788 3.82247 3.99135 4.89182 5.35564 5.43214 5.54791
5.71174 5.96709 6.04323 6.28038 6.38376 6.50560 6.59975 6.88287
7.16538 7.25149 7.61988 7.84955 8.04224 8.41529 8.69133 9.10524
9.27260 10.28541
Molecular weight = 168.09amu
Principal moments of inertia in cm(-1)
A = 0.072950 B = 0.012232 C = 0.011418
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 383.734188 B = 2288.581528 C = 2451.689039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.819 5.819
2 C 0.073 3.927
3 Si 0.911 3.089
4 H -0.260 1.260
5 H -0.273 1.273
6 H -0.274 1.274
7 C -0.463 4.463
8 H 0.077 0.923
9 C 0.064 3.936
10 C -0.422 4.422
11 C 0.145 3.855
12 H 0.067 0.933
13 C -0.146 4.146
14 C -0.155 4.155
15 C 0.042 3.958
16 O -0.381 6.381
17 H 0.280 0.720
18 H 0.082 0.918
19 H 0.068 0.932
20 H 0.058 0.942
21 H 0.071 0.929
22 H 0.064 0.936
23 H 0.067 0.933
24 H 0.046 0.954
25 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.737 -2.699 1.694 7.453
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.446 5.446
2 C -0.144 4.144
3 Si 0.736 3.264
4 H -0.184 1.184
5 H -0.198 1.198
6 H -0.199 1.199
7 C -0.493 4.493
8 H 0.095 0.905
9 C 0.044 3.956
10 C -0.445 4.445
11 C 0.089 3.911
12 H 0.085 0.915
13 C -0.184 4.184
14 C -0.193 4.193
15 C -0.035 4.035
16 O -0.301 6.301
17 H 0.091 0.909
18 H 0.100 0.900
19 H 0.086 0.914
20 H 0.077 0.923
21 H 0.090 0.910
22 H 0.083 0.917
23 H 0.086 0.914
24 H 0.065 0.935
25 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 6.417 -2.532 1.494 7.059
hybrid contribution 0.377 0.748 0.241 0.872
sum 6.794 -1.784 1.735 7.235
Atomic orbital electron populations
1.69579 1.07738 1.29418 1.37876 1.26160 0.94796 1.01834 0.91582
0.86223 0.80913 0.80837 0.78472 1.18380 1.19841 1.19888 1.19782
0.94917 0.90779 1.43815 0.90465 1.19925 0.96708 0.92081 0.86915
1.21781 0.91276 0.96150 1.35249 1.21309 0.94537 0.93401 0.81825
0.91497 1.23040 0.98899 0.96606 0.99828 1.23103 0.99622 0.99404
0.97172 1.23341 0.89592 0.95966 0.94613 1.89000 1.37740 1.66840
1.36498 0.90904 0.89979 0.91371 0.92302 0.90976 0.91695 0.91405
0.93539 0.90616
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -22.14 12.87 55.57 0.72 -21.43 15
2 C 0.07 1.92 5.50 -17.26 -0.09 1.82 15
3 Si 0.91 19.50 29.56 -169.99 -5.03 14.47 15
4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15
5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15
6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15
7 C -0.46 -12.91 8.67 -38.12 -0.33 -13.24 15
8 H 0.08 2.11 5.45 -52.48 -0.29 1.83 15
9 C 0.06 1.82 9.38 -40.03 -0.38 1.44 15
10 C -0.42 -11.26 9.11 -35.44 -0.32 -11.58 15
11 C 0.14 3.46 3.62 -27.30 -0.10 3.36 15
12 H 0.07 1.69 5.32 -51.93 -0.28 1.41 15
13 C -0.15 -2.86 6.63 -25.20 -0.17 -3.02 15
14 C -0.16 -2.55 7.15 -24.72 -0.18 -2.72 15
15 C 0.04 0.75 7.72 38.21 0.29 1.04 15
16 O -0.38 -8.93 11.17 -35.23 -0.39 -9.33 15
17 H 0.28 6.84 8.29 -40.82 -0.34 6.50 15
18 H 0.08 2.39 7.44 -52.49 -0.39 2.00 15
19 H 0.07 1.79 8.06 -52.49 -0.42 1.37 15
20 H 0.06 1.06 8.14 -51.93 -0.42 0.63 15
21 H 0.07 1.42 7.69 -51.93 -0.40 1.03 15
22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15
23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15
24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 15
25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15
LS Contribution 215.66 15.07 3.25 3.25
Total: -1.00 -28.97 215.66 -5.75 -34.72
By element:
Atomic # 1 Polarization: 4.24 SS G_CDS: -3.02 Total: 1.21 kcal
Atomic # 6 Polarization: -21.63 SS G_CDS: -1.27 Total: -22.90 kcal
Atomic # 7 Polarization: -22.14 SS G_CDS: 0.72 Total: -21.43 kcal
Atomic # 8 Polarization: -8.93 SS G_CDS: -0.39 Total: -9.33 kcal
Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal
Total LS contribution 3.25 Total: 3.25 kcal
Total: -28.97 -5.75 -34.72 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260269393.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.520 kcal
(2) G-P(sol) polarization free energy of solvation -28.968 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.488 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.715 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.236 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.12 seconds