Wall clock time and date at job start Mon Mar 30 2020 01:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86800 * 119.99570 * 2 1 4 4 H 1.48507 * 109.46748 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47527 * 300.00016 * 3 2 1 6 6 H 1.48502 * 109.47096 * 60.00311 * 3 2 1 7 7 C 1.40306 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99598 * 180.02562 * 7 2 1 9 9 C 1.40069 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.35034 * 120.00060 * 185.63901 * 9 7 2 11 11 C 1.50705 * 119.99720 * 354.53011 * 10 9 7 12 12 H 1.08994 * 109.87209 * 4.16208 * 11 10 9 13 13 C 1.54105 * 109.87684 * 125.16999 * 11 10 9 14 14 C 1.54816 * 104.18690 * 121.45388 * 13 11 10 15 15 C 1.54998 * 102.09209 * 20.88122 * 14 13 11 16 16 O 1.43744 * 109.87898 * 242.99741 * 11 10 9 17 17 H 0.96993 * 120.00390 * 359.97438 * 1 2 3 18 18 H 1.07995 * 120.00062 * 5.63588 * 9 7 2 19 19 H 1.07994 * 120.00583 * 174.25852 * 10 9 7 20 20 H 1.08995 * 110.48603 * 240.13090 * 13 11 10 21 21 H 1.08999 * 110.48637 * 2.64644 * 13 11 10 22 22 H 1.08999 * 110.90327 * 139.08011 * 14 13 11 23 23 H 1.08996 * 110.90295 * 262.68347 * 14 13 11 24 24 H 1.08991 * 110.61960 * 81.47495 * 15 14 13 25 25 H 1.08996 * 110.61426 * 204.32195 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7009 1.3465 0.0006 5 1 1.8821 2.3965 -1.2125 6 1 1.8821 2.3964 1.2126 7 6 2.0085 -1.2151 -0.0005 8 1 3.0885 -1.2150 -0.0001 9 6 1.3082 -2.4281 -0.0005 10 6 1.9785 -3.5947 0.1138 11 6 3.4855 -3.6006 0.1174 12 1 3.8600 -2.5773 0.0937 13 6 4.0037 -4.3192 1.3783 14 6 4.8661 -5.4802 0.8259 15 6 5.1898 -4.9903 -0.6085 16 8 3.9742 -4.3295 -1.0211 17 1 -0.4850 0.8400 0.0004 18 1 0.2321 -2.4304 -0.0920 19 1 1.4348 -4.5231 0.2072 20 1 4.6128 -3.6439 1.9791 21 1 3.1713 -4.7058 1.9663 22 1 5.7778 -5.6000 1.4111 23 1 4.2969 -6.4094 0.8004 24 1 6.0230 -4.2878 -0.5953 25 1 5.4113 -5.8344 -1.2615 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260269393.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:03 Heat of formation + Delta-G solvation = -49.235739 kcal Electronic energy + Delta-G solvation = -9415.026554 eV Core-core repulsion = 7586.210191 eV Total energy + Delta-G solvation = -1828.816363 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.37533 -34.29088 -31.67073 -31.09707 -27.67771 -24.78837 -21.86449 -20.60040 -18.85313 -16.59782 -15.60555 -14.98154 -14.44163 -14.09227 -12.88674 -12.78377 -12.43183 -11.68828 -11.32971 -10.95837 -10.76428 -10.61944 -10.38212 -10.12292 -9.76789 -9.58542 -9.37831 -8.26420 -7.64463 -6.74932 -4.27712 2.94229 3.10160 3.16788 3.82247 3.99135 4.89182 5.35564 5.43214 5.54791 5.71174 5.96709 6.04323 6.28038 6.38376 6.50560 6.59975 6.88287 7.16538 7.25149 7.61988 7.84955 8.04224 8.41529 8.69133 9.10524 9.27260 10.28541 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.072950 B = 0.012232 C = 0.011418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.734188 B = 2288.581528 C = 2451.689039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.064 3.936 10 C -0.422 4.422 11 C 0.145 3.855 12 H 0.067 0.933 13 C -0.146 4.146 14 C -0.155 4.155 15 C 0.042 3.958 16 O -0.381 6.381 17 H 0.280 0.720 18 H 0.082 0.918 19 H 0.068 0.932 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 -2.699 1.694 7.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.044 3.956 10 C -0.445 4.445 11 C 0.089 3.911 12 H 0.085 0.915 13 C -0.184 4.184 14 C -0.193 4.193 15 C -0.035 4.035 16 O -0.301 6.301 17 H 0.091 0.909 18 H 0.100 0.900 19 H 0.086 0.914 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.417 -2.532 1.494 7.059 hybrid contribution 0.377 0.748 0.241 0.872 sum 6.794 -1.784 1.735 7.235 Atomic orbital electron populations 1.69579 1.07738 1.29418 1.37876 1.26160 0.94796 1.01834 0.91582 0.86223 0.80913 0.80837 0.78472 1.18380 1.19841 1.19888 1.19782 0.94917 0.90779 1.43815 0.90465 1.19925 0.96708 0.92081 0.86915 1.21781 0.91276 0.96150 1.35249 1.21309 0.94537 0.93401 0.81825 0.91497 1.23040 0.98899 0.96606 0.99828 1.23103 0.99622 0.99404 0.97172 1.23341 0.89592 0.95966 0.94613 1.89000 1.37740 1.66840 1.36498 0.90904 0.89979 0.91371 0.92302 0.90976 0.91695 0.91405 0.93539 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.14 12.87 55.57 0.72 -21.43 15 2 C 0.07 1.92 5.50 -17.26 -0.09 1.82 15 3 Si 0.91 19.50 29.56 -169.99 -5.03 14.47 15 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 7 C -0.46 -12.91 8.67 -38.12 -0.33 -13.24 15 8 H 0.08 2.11 5.45 -52.48 -0.29 1.83 15 9 C 0.06 1.82 9.38 -40.03 -0.38 1.44 15 10 C -0.42 -11.26 9.11 -35.44 -0.32 -11.58 15 11 C 0.14 3.46 3.62 -27.30 -0.10 3.36 15 12 H 0.07 1.69 5.32 -51.93 -0.28 1.41 15 13 C -0.15 -2.86 6.63 -25.20 -0.17 -3.02 15 14 C -0.16 -2.55 7.15 -24.72 -0.18 -2.72 15 15 C 0.04 0.75 7.72 38.21 0.29 1.04 15 16 O -0.38 -8.93 11.17 -35.23 -0.39 -9.33 15 17 H 0.28 6.84 8.29 -40.82 -0.34 6.50 15 18 H 0.08 2.39 7.44 -52.49 -0.39 2.00 15 19 H 0.07 1.79 8.06 -52.49 -0.42 1.37 15 20 H 0.06 1.06 8.14 -51.93 -0.42 0.63 15 21 H 0.07 1.42 7.69 -51.93 -0.40 1.03 15 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 15 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 LS Contribution 215.66 15.07 3.25 3.25 Total: -1.00 -28.97 215.66 -5.75 -34.72 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -3.02 Total: 1.21 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -1.27 Total: -22.90 kcal Atomic # 7 Polarization: -22.14 SS G_CDS: 0.72 Total: -21.43 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.39 Total: -9.33 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -28.97 -5.75 -34.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269393.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.520 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds