Wall clock time and date at job start Mon Mar 30 2020 01:43:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30695 * 1
3 3 Si 1.86800 * 119.99570 * 2 1
4 4 H 1.48507 * 109.46748 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47527 * 300.00016 * 3 2 1
6 6 H 1.48502 * 109.47096 * 60.00311 * 3 2 1
7 7 C 1.40306 * 120.00009 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99598 * 180.02562 * 7 2 1
9 9 C 1.40069 * 120.00134 * 359.97438 * 7 2 1
10 10 C 1.35034 * 120.00060 * 185.63901 * 9 7 2
11 11 C 1.50705 * 119.99720 * 354.53011 * 10 9 7
12 12 H 1.08994 * 109.87209 * 4.16208 * 11 10 9
13 13 C 1.54105 * 109.87684 * 125.16999 * 11 10 9
14 14 C 1.54816 * 104.18690 * 121.45388 * 13 11 10
15 15 C 1.54998 * 102.09209 * 20.88122 * 14 13 11
16 16 O 1.43744 * 109.87898 * 242.99741 * 11 10 9
17 17 H 0.96993 * 120.00390 * 359.97438 * 1 2 3
18 18 H 1.07995 * 120.00062 * 5.63588 * 9 7 2
19 19 H 1.07994 * 120.00583 * 174.25852 * 10 9 7
20 20 H 1.08995 * 110.48603 * 240.13090 * 13 11 10
21 21 H 1.08999 * 110.48637 * 2.64644 * 13 11 10
22 22 H 1.08999 * 110.90327 * 139.08011 * 14 13 11
23 23 H 1.08996 * 110.90295 * 262.68347 * 14 13 11
24 24 H 1.08991 * 110.61960 * 81.47495 * 15 14 13
25 25 H 1.08996 * 110.61426 * 204.32195 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3069 0.0000 0.0000
3 14 2.2408 1.6178 0.0000
4 1 3.7009 1.3465 0.0006
5 1 1.8821 2.3965 -1.2125
6 1 1.8821 2.3964 1.2126
7 6 2.0085 -1.2151 -0.0005
8 1 3.0885 -1.2150 -0.0001
9 6 1.3082 -2.4281 -0.0005
10 6 1.9785 -3.5947 0.1138
11 6 3.4855 -3.6006 0.1174
12 1 3.8600 -2.5773 0.0937
13 6 4.0037 -4.3192 1.3783
14 6 4.8661 -5.4802 0.8259
15 6 5.1898 -4.9903 -0.6085
16 8 3.9742 -4.3295 -1.0211
17 1 -0.4850 0.8400 0.0004
18 1 0.2321 -2.4304 -0.0920
19 1 1.4348 -4.5231 0.2072
20 1 4.6128 -3.6439 1.9791
21 1 3.1713 -4.7058 1.9663
22 1 5.7778 -5.6000 1.4111
23 1 4.2969 -6.4094 0.8004
24 1 6.0230 -4.2878 -0.5953
25 1 5.4113 -5.8344 -1.2615
RHF calculation, no. of doubly occupied orbitals= 31
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260269393.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:43:03
Heat of formation + Delta-G solvation = -67.712679 kcal
Electronic energy + Delta-G solvation = -9415.827774 eV
Core-core repulsion = 7586.210191 eV
Total energy + Delta-G solvation = -1829.617583 eV
No. of doubly occupied orbitals = 31
Molecular weight
(most abundant/longest-lived isotopes) = 168.089 amu
Computer time = 0.12 seconds
Orbital eigenvalues (eV)
-40.03310 -36.33358 -33.65659 -32.67502 -29.43097 -26.79021 -23.50179 -22.15749
-20.87734 -18.61916 -17.25094 -16.71285 -16.21271 -15.77190 -14.68569 -14.37829
-14.24262 -13.47115 -13.07256 -12.58400 -12.41386 -12.27879 -12.00477 -11.80914
-11.65484 -11.40759 -11.18711 -10.14253 -9.76587 -8.74680 -6.39970 1.19813
1.36314 1.52952 1.86873 2.19945 3.16469 3.62796 3.93223 4.07184
4.21642 4.41327 4.58882 4.85298 4.94301 4.98566 5.05465 5.15925
5.22542 5.26003 5.60205 5.77808 6.23370 6.41542 6.57587 6.97520
7.13108 8.31687
Molecular weight = 168.09amu
Principal moments of inertia in cm(-1)
A = 0.072950 B = 0.012232 C = 0.011418
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 383.734188 B = 2288.581528 C = 2451.689039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.852 5.852
2 C 0.027 3.973
3 Si 0.990 3.010
4 H -0.257 1.257
5 H -0.262 1.262
6 H -0.259 1.259
7 C -0.491 4.491
8 H 0.078 0.922
9 C 0.037 3.963
10 C -0.426 4.426
11 C 0.142 3.858
12 H 0.049 0.951
13 C -0.144 4.144
14 C -0.143 4.143
15 C 0.032 3.968
16 O -0.414 6.414
17 H 0.292 0.708
18 H 0.059 0.941
19 H 0.062 0.938
20 H 0.075 0.925
21 H 0.064 0.936
22 H 0.103 0.897
23 H 0.072 0.928
24 H 0.062 0.938
25 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.673 -2.319 2.128 9.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.479 5.479
2 C -0.187 4.187
3 Si 0.810 3.190
4 H -0.181 1.181
5 H -0.187 1.187
6 H -0.183 1.183
7 C -0.520 4.520
8 H 0.096 0.904
9 C 0.016 3.984
10 C -0.448 4.448
11 C 0.086 3.914
12 H 0.067 0.933
13 C -0.182 4.182
14 C -0.180 4.180
15 C -0.044 4.044
16 O -0.335 6.335
17 H 0.103 0.897
18 H 0.077 0.923
19 H 0.080 0.920
20 H 0.094 0.906
21 H 0.083 0.917
22 H 0.122 0.878
23 H 0.091 0.909
24 H 0.081 0.919
25 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 8.346 -2.183 1.929 8.840
hybrid contribution -0.262 0.529 0.075 0.595
sum 8.084 -1.654 2.004 8.491
Atomic orbital electron populations
1.69633 1.09354 1.31285 1.37598 1.27155 0.95699 1.05515 0.90313
0.85043 0.79206 0.75450 0.79294 1.18071 1.18654 1.18317 1.19962
0.95101 0.91545 1.45422 0.90361 1.19976 0.95799 0.93557 0.89037
1.22044 0.93513 0.95231 1.34008 1.21198 0.92498 0.93510 0.84206
0.93347 1.22959 0.99513 0.97931 0.97831 1.23086 1.00600 0.97945
0.96391 1.23721 0.87806 0.96885 0.96013 1.88921 1.40433 1.67310
1.36850 0.89710 0.92275 0.91983 0.90597 0.91732 0.87814 0.90904
0.91944 0.87941
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -46.61 12.87 21.89 0.28 -46.33 15
2 C 0.03 1.42 5.50 85.37 0.47 1.89 15
3 Si 0.99 39.42 29.56 68.60 2.03 41.44 15
4 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15
5 H -0.26 -9.91 7.11 99.48 0.71 -9.21 15
6 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15
7 C -0.49 -28.03 8.67 23.22 0.20 -27.83 15
8 H 0.08 4.36 5.45 -2.91 -0.02 4.35 15
9 C 0.04 2.17 9.38 21.98 0.21 2.38 15
10 C -0.43 -23.41 9.11 24.95 0.23 -23.18 15
11 C 0.14 6.79 3.62 30.22 0.11 6.90 15
12 H 0.05 2.48 5.32 -2.39 -0.01 2.46 15
13 C -0.14 -5.42 6.63 31.59 0.21 -5.21 15
14 C -0.14 -4.19 7.15 31.90 0.23 -3.96 15
15 C 0.03 1.04 7.72 72.67 0.56 1.60 15
16 O -0.41 -19.18 11.17 -148.98 -1.66 -20.84 15
17 H 0.29 14.22 8.29 -92.71 -0.77 13.45 15
18 H 0.06 3.65 7.44 -2.91 -0.02 3.63 15
19 H 0.06 3.38 8.06 -2.91 -0.02 3.35 15
20 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15
21 H 0.06 2.49 7.69 -2.39 -0.02 2.47 15
22 H 0.10 2.29 8.14 -2.39 -0.02 2.27 15
23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15
24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 15
25 H 0.10 2.76 8.14 -2.39 -0.02 2.74 15
Total: -1.00 -63.51 215.66 4.02 -59.49
By element:
Atomic # 1 Polarization: 12.49 SS G_CDS: 1.16 Total: 13.65 kcal
Atomic # 6 Polarization: -49.63 SS G_CDS: 2.21 Total: -47.41 kcal
Atomic # 7 Polarization: -46.61 SS G_CDS: 0.28 Total: -46.33 kcal
Atomic # 8 Polarization: -19.18 SS G_CDS: -1.66 Total: -20.84 kcal
Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.44 kcal
Total: -63.51 4.02 -59.49 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260269393.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.221 kcal
(2) G-P(sol) polarization free energy of solvation -63.512 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.733 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.492 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.12 seconds