Wall clock time and date at job start Mon Mar 30 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 H 1.08995 * 115.55224 * 330.71804 * 4 3 2 6 6 C 1.53004 * 117.49721 * 116.38968 * 4 3 2 7 7 C 1.52997 * 117.49584 * 185.01233 * 4 3 2 8 8 H 1.08999 * 117.50127 * 145.02007 * 7 4 3 9 9 C 1.53003 * 117.50155 * 359.97438 * 7 4 3 10 10 C 1.50697 * 109.47519 * 175.00166 * 9 7 4 11 11 H 1.08005 * 119.99709 * 0.02562 * 10 9 7 12 12 C 1.37870 * 120.00269 * 180.02562 * 10 9 7 13 13 N 1.31513 * 120.00359 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00047 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47155 * 90.00289 * 14 12 10 16 16 H 1.48506 * 109.47297 * 210.00260 * 14 12 10 17 17 H 1.48497 * 109.47207 * 330.00229 * 14 12 10 18 18 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 20 20 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 21 21 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 22 22 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 23 23 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 24 24 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 25 25 H 1.08998 * 117.49898 * 214.97686 * 6 4 3 26 26 H 1.09000 * 117.49807 * 0.02562 * 6 4 3 27 27 H 1.08996 * 109.47353 * 295.00590 * 9 7 4 28 28 H 1.09002 * 109.46521 * 55.00204 * 9 7 4 29 29 H 0.96994 * 120.00539 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 4.0404 0.5846 0.4800 6 6 4.2760 2.0458 -1.2166 7 6 4.2766 2.7943 0.1178 8 1 5.2119 2.8262 0.6766 9 6 3.3991 4.0429 0.2273 10 6 4.2704 5.2507 0.4574 11 1 5.3429 5.1391 0.5190 12 6 3.6985 6.4983 0.5893 13 7 2.3925 6.6342 0.5149 14 14 4.7785 7.9953 0.8753 15 1 5.1646 8.5842 -0.4322 16 1 4.0292 9.0019 1.6695 17 1 6.0002 7.5902 1.6158 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 1.6768 1.9564 0.8899 24 1 1.6767 1.9563 -0.8900 25 1 5.2110 1.5851 -1.5357 26 1 3.6505 2.4432 -2.0159 27 1 2.8348 4.1725 -0.6962 28 1 2.7079 3.9290 1.0624 29 1 1.9902 7.5120 0.6073 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260367116.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:29 Heat of formation + Delta-G solvation = -11.352557 kcal Electronic energy + Delta-G solvation = -9416.585866 eV Core-core repulsion = 7725.245335 eV Total energy + Delta-G solvation = -1691.340531 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.58187 -33.75906 -32.57156 -28.31001 -26.69929 -23.21440 -21.46140 -20.50957 -18.42702 -16.36866 -15.01368 -14.54022 -14.23950 -13.48102 -12.89459 -12.33227 -11.89859 -11.83038 -11.62470 -11.00209 -10.85466 -10.67998 -10.57987 -10.45168 -10.32671 -9.61332 -9.21665 -8.95140 -8.65848 -8.23343 -5.95926 -3.97285 3.34656 3.40555 3.44262 4.48225 4.64931 5.14848 5.33240 5.39866 5.44437 5.71133 5.80302 5.86479 5.97315 6.10252 6.16389 6.32851 6.36722 6.43699 6.65065 6.71875 6.82728 6.98451 7.20575 7.74298 7.85065 8.04099 8.49018 9.08654 9.65903 11.15431 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.071588 B = 0.010131 C = 0.009170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.031611 B = 2763.122745 C = 3052.784437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.169 4.169 5 H 0.088 0.912 6 C -0.186 4.186 7 C -0.118 4.118 8 H 0.088 0.912 9 C 0.050 3.950 10 C -0.515 4.515 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 H 0.047 0.953 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.018 0.982 28 H 0.022 0.978 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 -9.566 -1.133 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.121 4.121 4 C -0.187 4.187 5 H 0.106 0.894 6 C -0.223 4.223 7 C -0.137 4.137 8 H 0.107 0.893 9 C 0.013 3.987 10 C -0.553 4.553 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 H 0.066 0.934 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.927 -9.432 -1.121 9.544 hybrid contribution 0.608 0.875 0.096 1.070 sum -0.319 -8.557 -1.025 8.624 Atomic orbital electron populations 1.21785 0.96396 1.00816 1.01982 1.21522 0.95270 0.97685 1.01278 1.21091 0.93122 0.95423 1.02477 1.22364 0.94613 0.98280 1.03475 0.89378 1.23042 1.01321 1.05573 0.92398 1.22784 1.00588 0.92894 0.97397 0.89333 1.18719 0.93883 0.88967 0.97129 1.21276 0.93360 0.92047 1.48652 0.92706 1.25015 0.94937 0.99012 0.95570 1.69960 1.09445 1.23467 1.50817 0.86600 0.80536 0.82732 0.78166 1.20721 1.21260 1.19906 0.93380 0.92715 0.92813 0.92513 0.92542 0.91482 0.91987 0.90493 0.89489 0.96358 0.96005 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 15 2 C -0.12 -1.66 5.89 -26.73 -0.16 -1.81 15 3 C -0.08 -1.44 4.58 -26.73 -0.12 -1.57 15 4 C -0.17 -3.07 5.74 -90.62 -0.52 -3.59 15 5 H 0.09 1.45 8.07 -51.93 -0.42 1.03 15 6 C -0.19 -3.51 9.82 -26.73 -0.26 -3.77 15 7 C -0.12 -2.59 5.70 -90.62 -0.52 -3.10 15 8 H 0.09 1.92 8.00 -51.93 -0.42 1.51 15 9 C 0.05 1.32 4.33 -27.88 -0.12 1.20 15 10 C -0.52 -14.93 9.08 -34.44 -0.31 -15.25 15 11 H 0.05 1.55 7.68 -52.48 -0.40 1.15 15 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 13 N -0.90 -27.34 13.29 55.43 0.74 -26.60 15 14 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 15 15 H -0.28 -6.84 7.11 56.52 0.40 -6.43 15 16 H -0.29 -6.99 7.11 56.52 0.40 -6.58 15 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 18 H 0.05 0.51 8.14 -51.93 -0.42 0.09 15 19 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 20 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 23 H 0.07 1.25 7.60 -51.93 -0.39 0.85 15 24 H 0.06 1.12 7.87 -51.93 -0.41 0.72 15 25 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 26 H 0.09 1.67 7.92 -51.93 -0.41 1.26 15 27 H 0.02 0.51 7.87 -51.93 -0.41 0.10 15 28 H 0.02 0.61 7.60 -51.93 -0.39 0.22 15 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 LS Contribution 244.43 15.07 3.68 3.68 Total: -1.00 -29.76 244.43 -7.27 -37.03 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -4.93 Total: -3.19 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -1.74 Total: -27.90 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.76 -7.27 -37.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260367116.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.675 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds