Wall clock time and date at job start Mon Mar 30 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47511 * 2 1 4 4 C 1.52996 * 109.47365 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.54951 * 330.58504 * 4 3 2 6 6 C 1.53002 * 117.49888 * 116.25530 * 4 3 2 7 7 C 1.53000 * 117.50107 * 184.91292 * 4 3 2 8 8 H 1.09008 * 117.49673 * 359.97438 * 7 4 3 9 9 C 1.52996 * 117.49997 * 144.99643 * 7 4 3 10 10 C 1.50699 * 109.47193 * 185.00008 * 9 7 4 11 11 H 1.08006 * 119.99739 * 0.02562 * 10 9 7 12 12 C 1.37879 * 120.00328 * 179.97438 * 10 9 7 13 13 N 1.31513 * 120.00219 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99605 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47096 * 89.99905 * 14 12 10 16 16 H 1.48498 * 109.47174 * 209.99735 * 14 12 10 17 17 H 1.48497 * 109.47536 * 329.99777 * 14 12 10 18 18 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.46467 * 299.99924 * 1 2 3 20 20 H 1.08991 * 109.46743 * 59.99409 * 1 2 3 21 21 H 1.09002 * 109.47130 * 239.99823 * 2 1 3 22 22 H 1.09004 * 109.47245 * 120.00240 * 2 1 3 23 23 H 1.09002 * 109.47067 * 59.99785 * 3 2 1 24 24 H 1.09004 * 109.47062 * 300.00352 * 3 2 1 25 25 H 1.09000 * 117.49996 * 215.00804 * 6 4 3 26 26 H 1.08998 * 117.49632 * 359.97438 * 6 4 3 27 27 H 1.08994 * 109.47531 * 305.00179 * 9 7 4 28 28 H 1.09001 * 109.46964 * 65.00269 * 9 7 4 29 29 H 0.96997 * 119.99960 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0400 0.5858 0.4840 6 6 4.2771 2.0426 -1.2163 7 6 4.2766 2.7945 0.1170 8 1 3.6513 3.6842 0.1926 9 6 5.5885 2.8408 0.9028 10 6 6.0612 4.2679 1.0076 11 1 5.4834 5.0625 0.5588 12 6 7.2307 4.5595 1.6771 13 7 7.6430 5.8049 1.7689 14 14 8.2296 3.1853 2.4538 15 1 9.2139 2.6707 1.4680 16 1 8.9478 3.7072 3.6441 17 1 7.3213 2.0854 2.8666 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3632 0.5138 0.8900 20 1 -0.3632 0.5139 -0.8899 21 1 1.8934 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.6768 1.9563 0.8900 24 1 1.6768 1.9563 -0.8900 25 1 5.2120 1.5808 -1.5337 26 1 3.6522 2.4370 -2.0175 27 1 5.4278 2.4371 1.9024 28 1 6.3420 2.2454 0.3873 29 1 8.4656 6.0100 2.2403 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260367131.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:31 Heat of formation + Delta-G solvation = -8.569837 kcal Electronic energy + Delta-G solvation = -9295.063325 eV Core-core repulsion = 7603.843462 eV Total energy + Delta-G solvation = -1691.219863 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.64412 -34.06421 -32.52618 -29.17383 -26.75038 -22.81428 -21.70233 -20.09703 -19.34353 -16.64207 -15.14310 -14.66936 -13.91383 -13.71710 -13.05412 -12.55362 -12.49195 -12.06764 -11.68498 -11.14905 -11.08284 -10.75285 -10.66862 -10.56568 -10.18753 -9.86479 -9.28096 -9.09888 -8.73622 -8.46519 -6.00849 -3.97852 3.32856 3.40006 3.44215 4.46930 4.48515 4.94196 5.14453 5.24120 5.32436 5.57886 5.63973 5.68564 5.79112 5.91789 5.98983 6.09157 6.19583 6.31610 6.43085 6.45113 6.68503 6.80264 6.91437 7.33581 7.42833 7.82787 8.59165 9.04442 9.61534 11.12771 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.082586 B = 0.009227 C = 0.008888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.958058 B = 3033.910800 C = 3149.576897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.173 4.173 5 H 0.095 0.905 6 C -0.183 4.183 7 C -0.107 4.107 8 H 0.096 0.904 9 C 0.012 3.988 10 C -0.514 4.514 11 H 0.072 0.928 12 C 0.064 3.936 13 N -0.905 5.905 14 Si 0.880 3.120 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.266 1.266 18 H 0.049 0.951 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.020 0.980 28 H 0.013 0.987 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.566 -10.472 -2.936 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.123 4.123 4 C -0.191 4.191 5 H 0.113 0.887 6 C -0.220 4.220 7 C -0.125 4.125 8 H 0.114 0.886 9 C -0.026 4.026 10 C -0.552 4.552 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.190 1.190 18 H 0.068 0.932 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.426 -10.359 -2.862 14.295 hybrid contribution 0.690 -0.588 0.370 0.979 sum -8.736 -10.947 -2.492 14.225 Atomic orbital electron populations 1.21787 0.96375 1.01118 1.01682 1.21517 0.95160 0.97416 1.01813 1.21153 0.93442 0.96114 1.01558 1.22467 0.93828 0.99118 1.03714 0.88697 1.23094 1.01688 1.05395 0.91802 1.22528 0.99564 0.92939 0.97512 0.88597 1.19237 0.90786 0.97943 0.94590 1.21145 1.07670 0.91762 1.34626 0.90992 1.25030 0.97364 0.95355 0.95886 1.69914 1.23185 1.17953 1.43390 0.86780 0.80476 0.82897 0.79150 1.20341 1.21378 1.19031 0.93151 0.92824 0.92935 0.92207 0.92185 0.91950 0.92341 0.89589 0.89995 0.96168 0.96909 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 15 2 C -0.12 -1.45 5.89 -26.73 -0.16 -1.61 15 3 C -0.09 -1.21 5.49 -26.73 -0.15 -1.36 15 4 C -0.17 -2.95 5.45 -90.62 -0.49 -3.44 15 5 H 0.09 1.61 8.08 -51.93 -0.42 1.19 15 6 C -0.18 -3.26 9.83 -26.69 -0.26 -3.53 15 7 C -0.11 -2.24 5.42 -90.59 -0.49 -2.73 15 8 H 0.10 2.05 8.00 -51.92 -0.42 1.64 15 9 C 0.01 0.29 4.32 -27.89 -0.12 0.17 15 10 C -0.51 -15.08 9.63 -34.44 -0.33 -15.41 15 11 H 0.07 2.26 7.92 -52.48 -0.42 1.85 15 12 C 0.06 1.92 5.47 -17.82 -0.10 1.82 15 13 N -0.91 -28.43 13.96 55.43 0.77 -27.66 15 14 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 15 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 17 H -0.27 -6.44 6.54 56.52 0.37 -6.07 15 18 H 0.05 0.45 8.14 -51.93 -0.42 0.03 15 19 H 0.05 0.53 8.14 -51.93 -0.42 0.11 15 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 15 21 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 24 H 0.06 0.80 7.88 -51.93 -0.41 0.39 15 25 H 0.09 1.53 8.03 -51.93 -0.42 1.11 15 26 H 0.08 1.32 8.03 -51.93 -0.42 0.91 15 27 H 0.02 0.50 7.20 -51.93 -0.37 0.13 15 28 H 0.01 0.31 7.31 -51.93 -0.38 -0.07 15 29 H 0.26 7.69 8.31 -40.82 -0.34 7.36 15 LS Contribution 243.21 15.07 3.67 3.67 Total: -1.00 -30.38 243.21 -6.91 -37.29 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -4.95 Total: -3.52 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -1.73 Total: -27.27 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.77 Total: -27.66 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.38 -6.91 -37.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260367131.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.720 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds