Wall clock time and date at job start Mon Mar 30 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47511 * 2 1 4 4 C 1.52996 * 109.47365 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.54951 * 330.58504 * 4 3 2 6 6 C 1.53002 * 117.49888 * 116.25530 * 4 3 2 7 7 C 1.53000 * 117.50107 * 184.91292 * 4 3 2 8 8 H 1.09008 * 117.49673 * 359.97438 * 7 4 3 9 9 C 1.52996 * 117.49997 * 144.99643 * 7 4 3 10 10 C 1.50699 * 109.47193 * 185.00008 * 9 7 4 11 11 H 1.08006 * 119.99739 * 0.02562 * 10 9 7 12 12 C 1.37879 * 120.00328 * 179.97438 * 10 9 7 13 13 N 1.31513 * 120.00219 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99605 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47096 * 89.99905 * 14 12 10 16 16 H 1.48498 * 109.47174 * 209.99735 * 14 12 10 17 17 H 1.48497 * 109.47536 * 329.99777 * 14 12 10 18 18 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.46467 * 299.99924 * 1 2 3 20 20 H 1.08991 * 109.46743 * 59.99409 * 1 2 3 21 21 H 1.09002 * 109.47130 * 239.99823 * 2 1 3 22 22 H 1.09004 * 109.47245 * 120.00240 * 2 1 3 23 23 H 1.09002 * 109.47067 * 59.99785 * 3 2 1 24 24 H 1.09004 * 109.47062 * 300.00352 * 3 2 1 25 25 H 1.09000 * 117.49996 * 215.00804 * 6 4 3 26 26 H 1.08998 * 117.49632 * 359.97438 * 6 4 3 27 27 H 1.08994 * 109.47531 * 305.00179 * 9 7 4 28 28 H 1.09001 * 109.46964 * 65.00269 * 9 7 4 29 29 H 0.96997 * 119.99960 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0400 0.5858 0.4840 6 6 4.2771 2.0426 -1.2163 7 6 4.2766 2.7945 0.1170 8 1 3.6513 3.6842 0.1926 9 6 5.5885 2.8408 0.9028 10 6 6.0612 4.2679 1.0076 11 1 5.4834 5.0625 0.5588 12 6 7.2307 4.5595 1.6771 13 7 7.6430 5.8049 1.7689 14 14 8.2296 3.1853 2.4538 15 1 9.2139 2.6707 1.4680 16 1 8.9478 3.7072 3.6441 17 1 7.3213 2.0854 2.8666 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3632 0.5138 0.8900 20 1 -0.3632 0.5139 -0.8899 21 1 1.8934 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.6768 1.9563 0.8900 24 1 1.6768 1.9563 -0.8900 25 1 5.2120 1.5808 -1.5337 26 1 3.6522 2.4370 -2.0175 27 1 5.4278 2.4371 1.9024 28 1 6.3420 2.2454 0.3873 29 1 8.4656 6.0100 2.2403 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260367131.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:31 Heat of formation + Delta-G solvation = -25.850055 kcal Electronic energy + Delta-G solvation = -9295.812651 eV Core-core repulsion = 7603.843462 eV Total energy + Delta-G solvation = -1691.969189 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.09673 -35.41043 -34.48522 -31.09331 -27.94665 -24.84182 -22.75256 -21.40209 -21.03570 -18.86378 -16.61991 -16.03378 -15.54581 -15.28069 -14.50065 -14.30734 -13.93226 -13.44685 -13.03882 -12.83600 -12.48703 -12.21198 -12.05100 -11.84358 -11.71299 -11.55463 -11.44483 -10.84786 -10.58463 -10.26639 -8.30316 -6.34097 1.34379 1.36679 1.49065 2.35341 2.96150 3.09621 3.75535 4.11646 4.13736 4.28153 4.37484 4.48924 4.69692 4.77317 4.94013 4.97330 5.00516 5.10701 5.16092 5.22875 5.38568 5.42838 5.43388 5.52004 5.60556 5.67367 6.28737 6.72723 7.29607 8.86796 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.082586 B = 0.009227 C = 0.008888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.958058 B = 3033.910800 C = 3149.576897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.085 4.085 4 C -0.144 4.144 5 H 0.102 0.898 6 C -0.172 4.172 7 C -0.147 4.147 8 H 0.079 0.921 9 C 0.018 3.982 10 C -0.529 4.529 11 H 0.029 0.971 12 C 0.001 3.999 13 N -0.953 5.953 14 Si 0.954 3.046 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.248 1.248 18 H 0.064 0.936 19 H 0.052 0.948 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.992 -13.026 -2.995 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.122 4.122 4 C -0.163 4.163 5 H 0.120 0.880 6 C -0.209 4.209 7 C -0.165 4.165 8 H 0.097 0.903 9 C -0.019 4.019 10 C -0.567 4.567 11 H 0.047 0.953 12 C -0.195 4.195 13 N -0.594 5.594 14 Si 0.777 3.223 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.171 1.171 18 H 0.083 0.917 19 H 0.071 0.929 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.872 -12.921 -2.932 16.523 hybrid contribution 0.773 0.302 0.346 0.899 sum -9.099 -12.619 -2.586 15.771 Atomic orbital electron populations 1.21770 0.95001 1.02148 1.01887 1.21487 0.96364 0.95518 1.02196 1.21191 0.91298 0.98010 1.01724 1.22565 0.95495 0.96289 1.01912 0.88024 1.23192 1.02350 1.03961 0.91426 1.22278 0.98789 0.94929 1.00543 0.90292 1.19105 0.92799 0.94715 0.95297 1.21478 1.07573 0.93337 1.34301 0.95294 1.26062 0.98731 0.98274 0.96456 1.70071 1.24072 1.20571 1.44638 0.85601 0.78841 0.79523 0.78330 1.19025 1.20715 1.17124 0.91739 0.92874 0.92556 0.91600 0.92054 0.92343 0.91748 0.89289 0.88225 0.96230 0.96329 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.91 71.98 0.71 -1.90 15 2 C -0.12 -2.46 5.89 30.60 0.18 -2.27 15 3 C -0.08 -2.21 5.49 30.59 0.17 -2.04 15 4 C -0.14 -4.60 5.45 -10.79 -0.06 -4.66 15 5 H 0.10 3.13 8.08 -2.39 -0.02 3.11 15 6 C -0.17 -5.83 9.83 30.62 0.30 -5.53 15 7 C -0.15 -6.11 5.42 -10.77 -0.06 -6.17 15 8 H 0.08 3.49 8.00 -2.38 -0.02 3.47 15 9 C 0.02 0.89 4.32 29.85 0.13 1.02 15 10 C -0.53 -31.91 9.63 25.60 0.25 -31.66 15 11 H 0.03 1.92 7.92 -2.91 -0.02 1.90 15 12 C 0.00 0.07 5.47 84.66 0.46 0.53 15 13 N -0.95 -61.34 13.96 21.45 0.30 -61.04 15 14 Si 0.95 45.39 27.47 68.60 1.88 47.27 15 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 17 H -0.25 -10.98 6.54 99.48 0.65 -10.33 15 18 H 0.06 0.95 8.14 -2.39 -0.02 0.93 15 19 H 0.05 0.92 8.14 -2.39 -0.02 0.90 15 20 H 0.06 0.93 8.14 -2.39 -0.02 0.91 15 21 H 0.07 1.30 8.14 -2.39 -0.02 1.28 15 22 H 0.06 1.27 8.14 -2.38 -0.02 1.25 15 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.06 1.60 7.88 -2.38 -0.02 1.58 15 25 H 0.09 2.96 8.03 -2.39 -0.02 2.94 15 26 H 0.10 2.99 8.03 -2.39 -0.02 2.97 15 27 H 0.02 0.95 7.20 -2.39 -0.02 0.94 15 28 H 0.02 0.88 7.31 -2.39 -0.02 0.87 15 29 H 0.27 15.92 8.31 -92.71 -0.77 15.15 15 Total: -1.00 -65.97 243.21 5.29 -60.67 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.02 Total: 5.78 kcal Atomic # 6 Polarization: -54.77 SS G_CDS: 2.08 Total: -52.68 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.30 Total: -61.04 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.27 kcal Total: -65.97 5.29 -60.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260367131.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.825 kcal (2) G-P(sol) polarization free energy of solvation -65.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds