Wall clock time and date at job start Mon Mar 30 2020 02:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.46985 * 2 1 4 4 C 1.53005 * 109.47289 * 119.99983 * 2 1 3 5 5 H 1.09004 * 115.54892 * 274.33337 * 4 2 1 6 6 C 1.52999 * 117.51795 * 128.62806 * 4 2 1 7 7 C 1.52998 * 117.49609 * 59.99702 * 4 2 1 8 8 H 1.09004 * 117.50141 * 0.02562 * 7 4 2 9 9 C 1.53002 * 117.50116 * 215.00083 * 7 4 2 10 10 C 1.50696 * 109.46997 * 175.00070 * 9 7 4 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 9 7 12 12 C 1.37885 * 119.99717 * 180.02562 * 10 9 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 H 1.09004 * 109.47626 * 299.99888 * 1 2 3 19 19 H 1.09000 * 109.47174 * 60.00225 * 1 2 3 20 20 H 1.09003 * 109.47492 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47179 * 240.00287 * 2 1 3 22 22 H 1.09007 * 109.47190 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.47478 * 300.00058 * 3 2 1 24 24 H 1.09007 * 109.47263 * 60.00264 * 3 2 1 25 25 H 1.09000 * 117.49789 * 145.03121 * 6 4 2 26 26 H 1.09001 * 117.49913 * 0.02562 * 6 4 2 27 27 H 1.09005 * 109.46767 * 55.00421 * 9 7 4 28 28 H 1.09002 * 109.47113 * 295.00761 * 9 7 4 29 29 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.1266 -0.1060 2.1449 6 6 3.0743 -1.8313 1.0519 7 6 1.6356 -2.1852 1.4343 8 1 1.0066 -2.6346 0.6658 9 6 1.3841 -2.6736 2.8623 10 6 0.8817 -4.0939 2.8262 11 1 0.7549 -4.5980 1.8795 12 6 0.5838 -4.7499 4.0018 13 7 0.1458 -5.9896 3.9704 14 14 0.8024 -3.8777 5.6392 15 1 2.1780 -4.1140 6.1462 16 1 0.5858 -2.4200 5.4564 17 1 -0.1829 -4.4058 6.6167 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6766 1.9564 0.8901 25 1 3.8414 -1.9464 1.8176 26 1 3.3919 -2.0477 0.0319 27 1 0.6385 -2.0365 3.3381 28 1 2.3137 -2.6313 3.4298 29 1 -0.0633 -6.4511 4.7975 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260371065.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:36 Heat of formation + Delta-G solvation = -5.810019 kcal Electronic energy + Delta-G solvation = -9521.968411 eV Core-core repulsion = 7830.868223 eV Total energy + Delta-G solvation = -1691.100188 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.96210 -33.69993 -32.31202 -28.75944 -26.92302 -23.06017 -22.32638 -19.68316 -19.23883 -16.63976 -14.80907 -14.57062 -13.94590 -13.39412 -12.80813 -12.69144 -12.36789 -12.01522 -11.77126 -11.27637 -10.98507 -10.74419 -10.61157 -10.44558 -10.10695 -9.85461 -9.28691 -9.09836 -8.75059 -8.46557 -6.00856 -3.97748 3.32755 3.39943 3.44106 4.46802 4.48460 5.01700 5.22281 5.31350 5.43590 5.66543 5.74370 5.78427 5.88873 6.00626 6.07095 6.15165 6.24992 6.32735 6.49177 6.61659 6.70194 6.81816 6.92472 7.34177 7.43362 7.82994 8.59261 9.04585 9.61657 11.12790 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.069679 B = 0.010987 C = 0.010763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.746113 B = 2547.772603 C = 2600.911918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.168 4.168 5 H 0.094 0.906 6 C -0.183 4.183 7 C -0.104 4.104 8 H 0.096 0.904 9 C 0.012 3.988 10 C -0.514 4.514 11 H 0.072 0.928 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.879 3.121 15 H -0.278 1.278 16 H -0.266 1.266 17 H -0.288 1.288 18 H 0.053 0.947 19 H 0.046 0.954 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.020 0.980 28 H 0.012 0.988 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.923 11.869 -5.231 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.199 4.199 4 C -0.186 4.186 5 H 0.112 0.888 6 C -0.220 4.220 7 C -0.123 4.123 8 H 0.114 0.886 9 C -0.025 4.025 10 C -0.552 4.552 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.545 5.545 14 Si 0.706 3.294 15 H -0.203 1.203 16 H -0.190 1.190 17 H -0.214 1.214 18 H 0.072 0.928 19 H 0.065 0.935 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.859 11.724 -5.115 13.107 hybrid contribution 0.159 0.265 0.947 0.997 sum 3.018 11.989 -4.168 13.047 Atomic orbital electron populations 1.21805 0.95230 1.02335 1.00812 1.20643 0.95580 0.95294 0.96628 1.21804 1.00766 0.96226 1.01117 1.22476 1.05374 0.92101 0.98620 0.88755 1.23074 0.93780 1.03854 1.01310 1.22482 0.95602 0.93612 1.00569 0.88578 1.19232 0.96107 0.96944 0.90214 1.21145 1.43205 0.96133 0.94689 0.90994 1.25026 0.94744 0.94719 0.99104 1.69917 1.45803 1.11114 1.27618 0.86792 0.78058 0.80583 0.83945 1.20339 1.19039 1.21374 0.92798 0.93531 0.92031 0.91741 0.92933 0.93249 0.92899 0.89582 0.90017 0.96199 0.96962 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.03 37.15 0.34 -1.69 15 2 C -0.06 -0.90 3.07 -90.62 -0.28 -1.17 15 3 C -0.14 -1.70 9.17 37.16 0.34 -1.36 15 4 C -0.17 -2.84 4.87 -90.62 -0.44 -3.29 15 5 H 0.09 1.61 8.11 -51.93 -0.42 1.19 15 6 C -0.18 -3.26 9.82 -26.73 -0.26 -3.52 15 7 C -0.10 -2.17 4.90 -90.62 -0.44 -2.61 15 8 H 0.10 2.05 7.47 -51.93 -0.39 1.66 15 9 C 0.01 0.30 4.32 -27.88 -0.12 0.18 15 10 C -0.51 -15.01 9.63 -34.44 -0.33 -15.34 15 11 H 0.07 2.25 7.92 -52.49 -0.42 1.84 15 12 C 0.06 1.92 5.47 -17.82 -0.10 1.83 15 13 N -0.91 -28.39 13.96 55.43 0.77 -27.62 15 14 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 15 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 16 H -0.27 -6.45 6.54 56.52 0.37 -6.08 15 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 18 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 19 H 0.05 0.56 8.14 -51.93 -0.42 0.13 15 20 H 0.06 0.95 7.29 -51.93 -0.38 0.57 15 21 H 0.06 0.90 7.90 -51.93 -0.41 0.49 15 22 H 0.05 0.60 8.14 -51.92 -0.42 0.18 15 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 15 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.09 1.53 8.03 -51.93 -0.42 1.11 15 26 H 0.08 1.32 8.05 -51.93 -0.42 0.90 15 27 H 0.02 0.50 7.20 -51.93 -0.37 0.12 15 28 H 0.01 0.30 7.30 -51.93 -0.38 -0.08 15 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 LS Contribution 240.77 15.07 3.63 3.63 Total: -1.00 -30.26 240.77 -6.45 -36.70 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.88 Total: -3.21 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -1.30 Total: -26.97 kcal Atomic # 7 Polarization: -28.39 SS G_CDS: 0.77 Total: -27.62 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.26 -6.45 -36.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260371065.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.894 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds