Wall clock time and date at job start Mon Mar 30 2020 02:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.46985 * 2 1 4 4 C 1.53005 * 109.47289 * 119.99983 * 2 1 3 5 5 H 1.09004 * 115.54892 * 274.33337 * 4 2 1 6 6 C 1.52999 * 117.51795 * 128.62806 * 4 2 1 7 7 C 1.52998 * 117.49609 * 59.99702 * 4 2 1 8 8 H 1.09004 * 117.50141 * 0.02562 * 7 4 2 9 9 C 1.53002 * 117.50116 * 215.00083 * 7 4 2 10 10 C 1.50696 * 109.46997 * 175.00070 * 9 7 4 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 9 7 12 12 C 1.37885 * 119.99717 * 180.02562 * 10 9 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 H 1.09004 * 109.47626 * 299.99888 * 1 2 3 19 19 H 1.09000 * 109.47174 * 60.00225 * 1 2 3 20 20 H 1.09003 * 109.47492 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47179 * 240.00287 * 2 1 3 22 22 H 1.09007 * 109.47190 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.47478 * 300.00058 * 3 2 1 24 24 H 1.09007 * 109.47263 * 60.00264 * 3 2 1 25 25 H 1.09000 * 117.49789 * 145.03121 * 6 4 2 26 26 H 1.09001 * 117.49913 * 0.02562 * 6 4 2 27 27 H 1.09005 * 109.46767 * 55.00421 * 9 7 4 28 28 H 1.09002 * 109.47113 * 295.00761 * 9 7 4 29 29 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.1266 -0.1060 2.1449 6 6 3.0743 -1.8313 1.0519 7 6 1.6356 -2.1852 1.4343 8 1 1.0066 -2.6346 0.6658 9 6 1.3841 -2.6736 2.8623 10 6 0.8817 -4.0939 2.8262 11 1 0.7549 -4.5980 1.8795 12 6 0.5838 -4.7499 4.0018 13 7 0.1458 -5.9896 3.9704 14 14 0.8024 -3.8777 5.6392 15 1 2.1780 -4.1140 6.1462 16 1 0.5858 -2.4200 5.4564 17 1 -0.1829 -4.4058 6.6167 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6766 1.9564 0.8901 25 1 3.8414 -1.9464 1.8176 26 1 3.3919 -2.0477 0.0319 27 1 0.6385 -2.0365 3.3381 28 1 2.3137 -2.6313 3.4298 29 1 -0.0633 -6.4511 4.7975 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260371065.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:36 Heat of formation + Delta-G solvation = -23.243209 kcal Electronic energy + Delta-G solvation = -9522.724371 eV Core-core repulsion = 7830.868223 eV Total energy + Delta-G solvation = -1691.856148 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.38289 -35.36619 -34.16703 -30.75942 -27.94290 -25.02373 -23.66378 -21.28319 -20.64664 -18.83627 -16.57825 -15.86113 -15.66215 -14.91933 -14.36423 -14.31162 -13.92129 -13.36773 -13.12661 -12.95058 -12.55207 -12.25604 -11.96486 -11.83819 -11.79380 -11.52537 -11.38055 -10.84709 -10.58046 -10.29401 -8.30189 -6.33705 1.34023 1.36217 1.48527 2.35215 2.96847 3.10104 3.76259 4.10109 4.11323 4.26608 4.51359 4.53807 4.74456 4.80497 4.88555 5.00311 5.02029 5.09360 5.15757 5.26283 5.36548 5.40454 5.50173 5.52082 5.63707 5.68559 6.29244 6.73190 7.29984 8.86981 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.069679 B = 0.010987 C = 0.010763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.746113 B = 2547.772603 C = 2600.911918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.140 4.140 5 H 0.100 0.900 6 C -0.174 4.174 7 C -0.141 4.141 8 H 0.079 0.921 9 C 0.019 3.981 10 C -0.528 4.528 11 H 0.029 0.971 12 C 0.002 3.998 13 N -0.953 5.953 14 Si 0.952 3.048 15 H -0.265 1.265 16 H -0.248 1.248 17 H -0.281 1.281 18 H 0.052 0.948 19 H 0.069 0.931 20 H 0.037 0.963 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.818 14.338 -4.848 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.194 4.194 4 C -0.158 4.158 5 H 0.118 0.882 6 C -0.211 4.211 7 C -0.159 4.159 8 H 0.097 0.903 9 C -0.018 4.018 10 C -0.566 4.566 11 H 0.047 0.953 12 C -0.194 4.194 13 N -0.594 5.594 14 Si 0.775 3.225 15 H -0.190 1.190 16 H -0.172 1.172 17 H -0.207 1.207 18 H 0.071 0.929 19 H 0.088 0.912 20 H 0.056 0.944 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.761 14.207 -4.751 15.445 hybrid contribution -0.144 -0.570 0.733 0.939 sum 3.617 13.637 -4.018 14.670 Atomic orbital electron populations 1.21800 0.95254 1.01155 1.01971 1.20707 0.95569 0.96734 0.95219 1.21761 1.01169 0.94282 1.02205 1.22584 1.02924 0.90193 1.00067 0.88222 1.23171 0.92197 1.03380 1.02323 1.22198 0.98270 0.97510 0.97971 0.90312 1.19092 0.95739 0.93979 0.92979 1.21478 1.43431 0.98465 0.93216 0.95272 1.26042 0.94228 0.95449 1.03693 1.70074 1.47173 1.13065 1.29056 0.85628 0.78601 0.80027 0.78216 1.19024 1.17176 1.20701 0.92877 0.91185 0.94386 0.91398 0.92286 0.91430 0.92628 0.89321 0.88283 0.96338 0.96459 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.03 71.98 0.65 -3.14 15 2 C -0.06 -1.65 3.07 -10.79 -0.03 -1.68 15 3 C -0.14 -2.76 9.17 71.98 0.66 -2.10 15 4 C -0.14 -4.44 4.87 -10.79 -0.05 -4.49 15 5 H 0.10 3.09 8.11 -2.38 -0.02 3.08 15 6 C -0.17 -5.87 9.82 30.60 0.30 -5.57 15 7 C -0.14 -5.83 4.90 -10.79 -0.05 -5.89 15 8 H 0.08 3.48 7.47 -2.39 -0.02 3.47 15 9 C 0.02 0.95 4.32 29.85 0.13 1.08 15 10 C -0.53 -31.79 9.63 25.60 0.25 -31.54 15 11 H 0.03 1.93 7.92 -2.91 -0.02 1.91 15 12 C 0.00 0.13 5.47 84.66 0.46 0.60 15 13 N -0.95 -61.33 13.96 21.45 0.30 -61.03 15 14 Si 0.95 45.41 27.47 68.60 1.88 47.29 15 15 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 16 H -0.25 -11.04 6.54 99.48 0.65 -10.39 15 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 18 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 19 H 0.07 1.49 8.14 -2.39 -0.02 1.47 15 20 H 0.04 1.16 7.29 -2.39 -0.02 1.14 15 21 H 0.07 1.73 7.90 -2.39 -0.02 1.71 15 22 H 0.06 1.12 8.14 -2.38 -0.02 1.10 15 23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 15 24 H 0.05 1.10 8.14 -2.38 -0.02 1.08 15 25 H 0.09 2.95 8.03 -2.39 -0.02 2.93 15 26 H 0.10 2.98 8.05 -2.39 -0.02 2.96 15 27 H 0.02 0.90 7.20 -2.38 -0.02 0.88 15 28 H 0.02 0.82 7.30 -2.39 -0.02 0.80 15 29 H 0.27 15.92 8.31 -92.71 -0.77 15.15 15 Total: -1.00 -65.95 240.77 5.52 -60.42 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.03 Total: 6.05 kcal Atomic # 6 Polarization: -55.06 SS G_CDS: 2.31 Total: -52.74 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.30 Total: -61.03 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -65.95 5.52 -60.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260371065.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.181 kcal (2) G-P(sol) polarization free energy of solvation -65.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds