Wall clock time and date at job start Mon Mar 30 2020 02:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47148 * 2 1 4 4 C 1.52998 * 109.47085 * 239.99826 * 2 1 3 5 5 H 1.08994 * 115.55396 * 80.27562 * 4 2 1 6 6 C 1.53006 * 117.50033 * 294.60511 * 4 2 1 7 7 C 1.53008 * 117.49824 * 225.94737 * 4 2 1 8 8 H 1.08997 * 117.49416 * 214.97833 * 7 4 2 9 9 C 1.52998 * 117.49794 * 0.02562 * 7 4 2 10 10 C 1.50693 * 109.47237 * 184.57447 * 9 7 4 11 11 H 1.08006 * 119.99701 * 359.97438 * 10 9 7 12 12 C 1.37875 * 120.00720 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99462 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00703 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46689 * 60.00214 * 14 12 10 16 16 H 1.48493 * 109.47263 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46912 * 300.00411 * 14 12 10 18 18 H 1.08997 * 109.47602 * 300.00102 * 1 2 3 19 19 H 1.08997 * 109.47060 * 59.99991 * 1 2 3 20 20 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46773 * 119.99778 * 2 1 3 22 22 H 1.09004 * 109.47319 * 60.92129 * 3 2 1 23 23 H 1.09004 * 109.46960 * 180.91823 * 3 2 1 24 24 H 1.09003 * 109.47371 * 300.91945 * 3 2 1 25 25 H 1.09000 * 117.49697 * 0.02562 * 6 4 2 26 26 H 1.09003 * 117.49966 * 145.02022 * 6 4 2 27 27 H 1.09006 * 109.46685 * 304.57133 * 9 7 4 28 28 H 1.08993 * 109.47228 * 64.56702 * 9 7 4 29 29 H 0.97000 * 120.00028 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 2.0401 -0.1313 -2.1656 6 6 1.7427 -2.2171 -1.3722 7 6 3.1652 -1.7418 -1.0659 8 1 3.9053 -1.8232 -1.8619 9 6 3.6938 -1.9632 0.3527 10 6 4.8636 -2.9123 0.3104 11 1 5.1964 -3.3174 -0.6338 12 6 5.5090 -3.2636 1.4771 13 7 5.1033 -2.7707 2.6269 14 14 6.9586 -4.4406 1.4247 15 1 8.0344 -3.8634 0.5794 16 1 7.4725 -4.6545 2.8014 17 1 6.5215 -5.7389 0.8516 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5138 0.8901 22 1 1.6902 1.9515 0.8981 23 1 3.1299 1.4424 -0.0165 24 1 1.6632 1.9610 -0.8816 25 1 1.1834 -2.6873 -0.5633 26 1 1.5476 -2.6112 -2.3696 27 1 4.0141 -1.0103 0.7739 28 1 2.9040 -2.3873 0.9727 29 1 5.5576 -3.0175 3.4477 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260371123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:41 Heat of formation + Delta-G solvation = -8.085273 kcal Electronic energy + Delta-G solvation = -9625.107594 eV Core-core repulsion = 7933.908744 eV Total energy + Delta-G solvation = -1691.198850 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.90409 -33.33707 -32.31677 -28.13599 -26.71449 -23.20904 -22.47785 -20.12051 -18.13702 -16.40420 -14.70960 -14.53101 -13.99174 -13.43630 -12.72502 -12.17631 -11.96156 -11.82538 -11.66235 -11.07054 -10.80896 -10.68940 -10.55516 -10.41581 -10.08409 -9.67183 -9.13527 -8.97419 -8.67961 -8.22995 -5.95906 -3.97339 3.36196 3.40167 3.42977 4.48035 4.63815 5.26314 5.39478 5.45022 5.65065 5.80318 5.91395 5.95055 6.04866 6.17094 6.25873 6.34137 6.37295 6.48836 6.73746 6.77656 6.84672 7.05022 7.20611 7.73510 7.84486 8.03634 8.49173 9.08301 9.65775 11.15316 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.071234 B = 0.011360 C = 0.010657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.977682 B = 2464.127783 C = 2626.756945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.162 4.162 5 H 0.086 0.914 6 C -0.185 4.185 7 C -0.117 4.117 8 H 0.088 0.912 9 C 0.051 3.949 10 C -0.516 4.516 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 H 0.047 0.953 19 H 0.046 0.954 20 H 0.052 0.948 21 H 0.084 0.916 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.022 0.978 28 H 0.018 0.982 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 4.403 -4.847 8.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C -0.196 4.196 4 C -0.180 4.180 5 H 0.105 0.895 6 C -0.222 4.222 7 C -0.136 4.136 8 H 0.106 0.894 9 C 0.014 3.986 10 C -0.555 4.555 11 H 0.072 0.928 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 H 0.066 0.934 19 H 0.065 0.935 20 H 0.071 0.929 21 H 0.103 0.897 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.034 4.401 -4.652 8.800 hybrid contribution 0.790 -0.705 -0.043 1.059 sum -5.245 3.697 -4.696 7.951 Atomic orbital electron populations 1.21780 0.96129 1.01305 1.00526 1.20693 0.94456 0.95731 0.98080 1.21743 1.01524 0.95934 1.00423 1.22345 1.06365 0.91013 0.98312 0.89541 1.22970 1.01794 0.96273 1.01159 1.22800 0.89460 0.99420 1.01884 0.89391 1.18719 0.95425 0.96646 0.87824 1.21240 1.14303 1.26907 0.93003 0.92760 1.25015 0.97464 0.96466 0.95569 1.69953 1.41282 1.44538 0.97874 0.86656 0.82880 0.81533 0.76927 1.20280 1.21322 1.20284 0.93397 0.93469 0.92899 0.89748 0.93314 0.92379 0.93595 0.89489 0.90485 0.95937 0.96364 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.09 37.16 0.34 -1.70 15 2 C -0.07 -1.23 2.78 -90.63 -0.25 -1.48 15 3 C -0.14 -2.15 9.19 37.15 0.34 -1.80 15 4 C -0.16 -2.94 5.07 -90.61 -0.46 -3.39 15 5 H 0.09 1.44 8.14 -51.93 -0.42 1.01 15 6 C -0.18 -3.47 9.47 -26.69 -0.25 -3.72 15 7 C -0.12 -2.55 5.69 -90.58 -0.52 -3.07 15 8 H 0.09 1.91 8.01 -51.93 -0.42 1.49 15 9 C 0.05 1.33 3.76 -27.89 -0.10 1.23 15 10 C -0.52 -14.92 9.08 -34.44 -0.31 -15.23 15 11 H 0.05 1.53 7.68 -52.48 -0.40 1.12 15 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 13 N -0.90 -27.22 13.29 55.43 0.74 -26.48 15 14 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 15 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 18 H 0.05 0.64 8.14 -51.93 -0.42 0.21 15 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.05 0.77 7.67 -51.93 -0.40 0.38 15 21 H 0.08 1.71 6.11 -51.93 -0.32 1.39 15 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.09 1.67 7.85 -51.93 -0.41 1.26 15 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 27 H 0.02 0.63 7.87 -51.93 -0.41 0.22 15 28 H 0.02 0.51 7.53 -51.93 -0.39 0.12 15 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 241.76 15.07 3.64 3.64 Total: -1.00 -29.54 241.76 -6.79 -36.34 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.84 Total: -2.78 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: -1.32 Total: -27.66 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.54 -6.79 -36.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260371123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.253 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds