Wall clock time and date at job start Mon Mar 30 2020 02:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47148 * 2 1 4 4 C 1.52998 * 109.47085 * 239.99826 * 2 1 3 5 5 H 1.08994 * 115.55396 * 80.27562 * 4 2 1 6 6 C 1.53006 * 117.50033 * 294.60511 * 4 2 1 7 7 C 1.53008 * 117.49824 * 225.94737 * 4 2 1 8 8 H 1.08997 * 117.49416 * 214.97833 * 7 4 2 9 9 C 1.52998 * 117.49794 * 0.02562 * 7 4 2 10 10 C 1.50693 * 109.47237 * 184.57447 * 9 7 4 11 11 H 1.08006 * 119.99701 * 359.97438 * 10 9 7 12 12 C 1.37875 * 120.00720 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99462 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00703 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46689 * 60.00214 * 14 12 10 16 16 H 1.48493 * 109.47263 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46912 * 300.00411 * 14 12 10 18 18 H 1.08997 * 109.47602 * 300.00102 * 1 2 3 19 19 H 1.08997 * 109.47060 * 59.99991 * 1 2 3 20 20 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46773 * 119.99778 * 2 1 3 22 22 H 1.09004 * 109.47319 * 60.92129 * 3 2 1 23 23 H 1.09004 * 109.46960 * 180.91823 * 3 2 1 24 24 H 1.09003 * 109.47371 * 300.91945 * 3 2 1 25 25 H 1.09000 * 117.49697 * 0.02562 * 6 4 2 26 26 H 1.09003 * 117.49966 * 145.02022 * 6 4 2 27 27 H 1.09006 * 109.46685 * 304.57133 * 9 7 4 28 28 H 1.08993 * 109.47228 * 64.56702 * 9 7 4 29 29 H 0.97000 * 120.00028 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 2.0401 -0.1313 -2.1656 6 6 1.7427 -2.2171 -1.3722 7 6 3.1652 -1.7418 -1.0659 8 1 3.9053 -1.8232 -1.8619 9 6 3.6938 -1.9632 0.3527 10 6 4.8636 -2.9123 0.3104 11 1 5.1964 -3.3174 -0.6338 12 6 5.5090 -3.2636 1.4771 13 7 5.1033 -2.7707 2.6269 14 14 6.9586 -4.4406 1.4247 15 1 8.0344 -3.8634 0.5794 16 1 7.4725 -4.6545 2.8014 17 1 6.5215 -5.7389 0.8516 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5138 0.8901 22 1 1.6902 1.9515 0.8981 23 1 3.1299 1.4424 -0.0165 24 1 1.6632 1.9610 -0.8816 25 1 1.1834 -2.6873 -0.5633 26 1 1.5476 -2.6112 -2.3696 27 1 4.0141 -1.0103 0.7739 28 1 2.9040 -2.3873 0.9727 29 1 5.5576 -3.0175 3.4477 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260371123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:41 Heat of formation + Delta-G solvation = -24.361793 kcal Electronic energy + Delta-G solvation = -9625.813397 eV Core-core repulsion = 7933.908744 eV Total energy + Delta-G solvation = -1691.904653 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.46083 -35.22037 -34.06468 -30.22169 -27.93168 -25.34496 -23.87341 -21.73193 -19.73588 -18.56917 -16.60347 -16.20706 -15.55233 -14.86802 -14.32484 -13.91114 -13.71167 -13.50049 -13.01702 -12.86281 -12.69051 -12.41713 -12.07364 -11.86918 -11.68906 -11.47695 -11.07435 -10.78672 -10.48515 -10.23418 -8.19412 -6.30432 1.39001 1.42597 1.50537 2.40883 3.03669 3.16293 3.84231 4.09451 4.18774 4.31846 4.52600 4.56685 4.81970 4.84500 4.88365 4.99900 5.04999 5.08231 5.24878 5.32636 5.38600 5.51142 5.55583 5.65714 5.70723 5.84444 6.28517 6.85187 7.38174 8.91994 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.071234 B = 0.011360 C = 0.010657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.977682 B = 2464.127783 C = 2626.756945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.136 4.136 4 C -0.137 4.137 5 H 0.115 0.885 6 C -0.170 4.170 7 C -0.153 4.153 8 H 0.088 0.912 9 C 0.065 3.935 10 C -0.543 4.543 11 H 0.057 0.943 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.267 1.267 18 H 0.058 0.942 19 H 0.069 0.931 20 H 0.047 0.953 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.106 0.894 27 H -0.008 1.008 28 H -0.011 1.011 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 4.482 -6.236 10.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 C -0.193 4.193 4 C -0.155 4.155 5 H 0.133 0.867 6 C -0.207 4.207 7 C -0.172 4.172 8 H 0.106 0.894 9 C 0.028 3.972 10 C -0.581 4.581 11 H 0.076 0.924 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.192 1.192 18 H 0.077 0.923 19 H 0.088 0.912 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.124 0.876 27 H 0.010 0.990 28 H 0.007 0.993 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.445 4.483 -6.053 9.914 hybrid contribution 0.889 -0.701 0.415 1.205 sum -5.556 3.782 -5.639 8.773 Atomic orbital electron populations 1.21717 0.93529 1.01595 1.02238 1.20726 0.96655 0.96314 0.95927 1.21717 1.00211 0.95035 1.02322 1.22479 1.02505 0.90946 0.99573 0.86728 1.23016 0.98429 0.97042 1.02232 1.22524 0.91242 1.04524 0.98862 0.89427 1.18430 0.94035 0.94359 0.90379 1.21707 1.15371 1.27617 0.93399 0.92428 1.25992 1.00585 0.98253 0.95037 1.70096 1.42775 1.45885 0.98632 0.85487 0.79000 0.79177 0.77310 1.19155 1.20678 1.19211 0.92289 0.91162 0.93362 0.93971 0.92219 0.94451 0.90886 0.90474 0.87612 0.98990 0.99297 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.09 71.98 0.65 -2.94 15 2 C -0.08 -2.63 2.78 -10.80 -0.03 -2.66 15 3 C -0.14 -4.01 9.19 71.98 0.66 -3.35 15 4 C -0.14 -4.75 5.07 -10.79 -0.05 -4.80 15 5 H 0.11 3.39 8.14 -2.39 -0.02 3.37 15 6 C -0.17 -6.15 9.47 30.62 0.29 -5.86 15 7 C -0.15 -6.70 5.69 -10.77 -0.06 -6.76 15 8 H 0.09 3.79 8.01 -2.39 -0.02 3.78 15 9 C 0.06 3.57 3.76 29.85 0.11 3.68 15 10 C -0.54 -32.17 9.08 25.60 0.23 -31.94 15 11 H 0.06 3.28 7.68 -2.91 -0.02 3.26 15 12 C 0.00 -0.07 5.46 84.65 0.46 0.39 15 13 N -0.93 -58.20 13.29 21.45 0.28 -57.92 15 14 Si 0.97 45.29 29.54 68.60 2.03 47.32 15 15 H -0.27 -11.98 7.11 99.48 0.71 -11.28 15 16 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 18 H 0.06 1.45 8.14 -2.39 -0.02 1.43 15 19 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.05 1.33 7.67 -2.39 -0.02 1.31 15 21 H 0.04 1.78 6.11 -2.38 -0.01 1.76 15 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 15 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.08 2.93 7.85 -2.39 -0.02 2.91 15 26 H 0.11 3.22 8.14 -2.39 -0.02 3.20 15 27 H -0.01 -0.49 7.87 -2.38 -0.02 -0.50 15 28 H -0.01 -0.67 7.53 -2.39 -0.02 -0.69 15 29 H 0.26 15.41 8.31 -92.71 -0.77 14.64 15 Total: -1.00 -64.64 241.76 5.66 -58.98 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.08 Total: 5.84 kcal Atomic # 6 Polarization: -56.49 SS G_CDS: 2.27 Total: -54.22 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.28 Total: -57.92 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -64.64 5.66 -58.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260371123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.617 kcal (2) G-P(sol) polarization free energy of solvation -64.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds