Wall clock time and date at job start Mon Mar 30 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35034 * 1 3 3 C 1.40068 * 120.00067 * 2 1 4 4 H 1.08007 * 119.99767 * 154.14569 * 3 2 1 5 5 C 1.40309 * 120.00381 * 334.15171 * 3 2 1 6 6 N 1.30689 * 119.99516 * 339.69449 * 5 3 2 7 7 Si 1.86796 * 120.00378 * 159.70197 * 5 3 2 8 8 H 1.48492 * 109.47328 * 84.97719 * 7 5 3 9 9 H 1.48503 * 109.46963 * 204.97815 * 7 5 3 10 10 H 1.48504 * 109.46754 * 324.97587 * 7 5 3 11 11 C 1.50699 * 119.99974 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.45970 * 359.29794 * 11 2 1 13 13 C 1.54507 * 110.50961 * 121.90184 * 11 2 1 14 14 C 1.54479 * 104.06371 * 118.78605 * 13 11 2 15 15 O 1.44426 * 104.80340 * 23.97735 * 14 13 11 16 16 C 1.44432 * 105.27493 * 319.49081 * 15 14 13 17 17 H 1.07999 * 119.99717 * 353.87922 * 1 2 3 18 18 H 1.08000 * 120.00328 * 173.89042 * 1 2 3 19 19 H 0.97001 * 120.00308 * 180.02562 * 6 5 3 20 20 H 1.09004 * 110.51228 * 237.42787 * 13 11 2 21 21 H 1.08992 * 110.51734 * 0.02562 * 13 11 2 22 22 H 1.09003 * 110.37525 * 142.80656 * 14 13 11 23 23 H 1.08998 * 110.37086 * 265.15065 * 14 13 11 24 24 H 1.08999 * 110.37213 * 281.68040 * 16 15 14 25 25 H 1.08994 * 110.37311 * 159.34062 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0497 1.2598 0.4079 5 6 1.4545 2.3674 -0.5298 6 7 0.4519 2.2621 -1.3614 7 14 2.0940 4.0547 -0.0466 8 1 3.2397 4.4181 -0.9185 9 1 1.0117 5.0588 -0.2072 10 1 2.5387 4.0284 1.3700 11 6 2.1038 -1.3051 -0.0006 12 1 1.4100 -2.1456 0.0116 13 6 3.0368 -1.3910 -1.2292 14 6 4.4512 -1.5069 -0.6190 15 8 4.2398 -2.0509 0.7021 16 6 3.0649 -1.3792 1.2066 17 1 -0.5400 0.9300 0.0997 18 1 -0.5401 -0.9300 -0.0995 19 1 0.0399 3.0601 -1.7280 20 1 2.8041 -2.2740 -1.8245 21 1 2.9534 -0.4894 -1.8359 22 1 5.0668 -2.1822 -1.2134 23 1 4.9183 -0.5242 -0.5544 24 1 3.3193 -0.3769 1.5511 25 1 2.6154 -1.9564 2.0145 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260473533.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:21 Heat of formation + Delta-G solvation = -40.939920 kcal Electronic energy + Delta-G solvation = -9733.377416 eV Core-core repulsion = 7904.920786 eV Total energy + Delta-G solvation = -1828.456629 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.66873 -34.71374 -32.00066 -29.40558 -27.51543 -25.11746 -22.09571 -20.70156 -18.94948 -15.80732 -15.55377 -15.18454 -14.36673 -14.34013 -12.86498 -12.78171 -12.09843 -11.66285 -11.15662 -11.00155 -10.85229 -10.65514 -10.38624 -9.95472 -9.63037 -9.19489 -9.01822 -8.82969 -7.24243 -6.46783 -4.07650 3.08763 3.20289 3.25516 4.07351 4.17516 4.69940 5.24501 5.60416 5.66319 5.92481 6.05262 6.15892 6.37819 6.49926 6.60036 6.80498 6.87293 7.08051 7.38589 7.50214 7.63845 8.20765 8.43053 8.99076 9.25145 9.44716 10.54876 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.057198 B = 0.016782 C = 0.014933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.409762 B = 1668.086864 C = 1874.637258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.346 4.346 2 C 0.041 3.959 3 C -0.477 4.477 4 H 0.062 0.938 5 C 0.081 3.919 6 N -0.801 5.801 7 Si 0.889 3.111 8 H -0.274 1.274 9 H -0.281 1.281 10 H -0.265 1.265 11 C -0.080 4.080 12 H 0.060 0.940 13 C -0.139 4.139 14 C 0.049 3.951 15 O -0.394 6.394 16 C 0.053 3.947 17 H 0.084 0.916 18 H 0.041 0.959 19 H 0.271 0.729 20 H 0.055 0.945 21 H 0.088 0.912 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.499 -2.321 0.778 5.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.386 4.386 2 C 0.039 3.961 3 C -0.509 4.509 4 H 0.080 0.920 5 C -0.134 4.134 6 N -0.427 5.427 7 Si 0.714 3.286 8 H -0.199 1.199 9 H -0.206 1.206 10 H -0.189 1.189 11 C -0.099 4.099 12 H 0.079 0.921 13 C -0.176 4.176 14 C -0.028 4.028 15 O -0.313 6.313 16 C -0.023 4.023 17 H 0.103 0.897 18 H 0.059 0.941 19 H 0.082 0.918 20 H 0.074 0.926 21 H 0.107 0.893 22 H 0.095 0.905 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.483 -2.360 0.738 5.119 hybrid contribution 0.014 1.069 -0.065 1.071 sum 4.497 -1.291 0.672 4.727 Atomic orbital electron populations 1.23258 0.94495 0.97393 1.23483 1.18222 0.92917 0.90075 0.94843 1.18951 1.01325 0.93119 1.37472 0.91990 1.25707 0.94413 1.00361 0.92947 1.69825 1.20630 1.30460 1.21827 0.86666 0.79015 0.82689 0.80201 1.19941 1.20583 1.18903 1.21588 0.96377 0.98667 0.93244 0.92110 1.22890 0.93876 1.02270 0.98609 1.23345 0.97427 0.98081 0.83903 1.88966 1.47412 1.64146 1.30787 1.23539 0.84765 0.97289 0.96684 0.89749 0.94092 0.91798 0.92593 0.89320 0.90497 0.92534 0.91275 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.35 -9.53 12.93 29.59 0.38 -9.15 15 2 C 0.04 1.08 4.56 -105.08 -0.48 0.60 15 3 C -0.48 -12.85 7.80 -38.12 -0.30 -13.14 15 4 H 0.06 1.62 6.90 -52.48 -0.36 1.25 15 5 C 0.08 2.16 5.00 -17.26 -0.09 2.07 15 6 N -0.80 -22.16 11.30 55.57 0.63 -21.54 15 7 Si 0.89 19.81 29.61 -169.99 -5.03 14.78 15 8 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 10 H -0.26 -5.87 7.11 56.52 0.40 -5.47 15 11 C -0.08 -1.79 3.33 -90.21 -0.30 -2.09 15 12 H 0.06 1.33 7.90 -51.93 -0.41 0.92 15 13 C -0.14 -2.82 6.52 -25.16 -0.16 -2.98 15 14 C 0.05 0.90 7.63 37.93 0.29 1.19 15 15 O -0.39 -7.92 11.65 -35.23 -0.41 -8.33 15 16 C 0.05 1.10 7.10 37.93 0.27 1.37 15 17 H 0.08 2.48 6.45 -52.49 -0.34 2.14 15 18 H 0.04 1.07 7.94 -52.49 -0.42 0.65 15 19 H 0.27 6.94 8.29 -40.82 -0.34 6.60 15 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.09 1.97 7.35 -51.93 -0.38 1.59 15 22 H 0.08 1.19 8.14 -51.93 -0.42 0.76 15 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.07 1.48 6.50 -51.93 -0.34 1.15 15 25 H 0.08 1.44 8.14 -51.93 -0.42 1.01 15 LS Contribution 212.64 15.07 3.20 3.20 Total: -1.00 -28.47 212.64 -5.07 -33.54 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.07 Total: 0.48 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -0.39 Total: -22.13 kcal Atomic # 7 Polarization: -22.16 SS G_CDS: 0.63 Total: -21.54 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.41 Total: -8.33 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -28.47 -5.07 -33.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260473533.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.397 kcal (2) G-P(sol) polarization free energy of solvation -28.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds