Wall clock time and date at job start Mon Mar 30 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35034 * 1 3 3 C 1.40068 * 120.00067 * 2 1 4 4 H 1.08007 * 119.99767 * 154.14569 * 3 2 1 5 5 C 1.40309 * 120.00381 * 334.15171 * 3 2 1 6 6 N 1.30689 * 119.99516 * 339.69449 * 5 3 2 7 7 Si 1.86796 * 120.00378 * 159.70197 * 5 3 2 8 8 H 1.48492 * 109.47328 * 84.97719 * 7 5 3 9 9 H 1.48503 * 109.46963 * 204.97815 * 7 5 3 10 10 H 1.48504 * 109.46754 * 324.97587 * 7 5 3 11 11 C 1.50699 * 119.99974 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.45970 * 359.29794 * 11 2 1 13 13 C 1.54507 * 110.50961 * 121.90184 * 11 2 1 14 14 C 1.54479 * 104.06371 * 118.78605 * 13 11 2 15 15 O 1.44426 * 104.80340 * 23.97735 * 14 13 11 16 16 C 1.44432 * 105.27493 * 319.49081 * 15 14 13 17 17 H 1.07999 * 119.99717 * 353.87922 * 1 2 3 18 18 H 1.08000 * 120.00328 * 173.89042 * 1 2 3 19 19 H 0.97001 * 120.00308 * 180.02562 * 6 5 3 20 20 H 1.09004 * 110.51228 * 237.42787 * 13 11 2 21 21 H 1.08992 * 110.51734 * 0.02562 * 13 11 2 22 22 H 1.09003 * 110.37525 * 142.80656 * 14 13 11 23 23 H 1.08998 * 110.37086 * 265.15065 * 14 13 11 24 24 H 1.08999 * 110.37213 * 281.68040 * 16 15 14 25 25 H 1.08994 * 110.37311 * 159.34062 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0497 1.2598 0.4079 5 6 1.4545 2.3674 -0.5298 6 7 0.4519 2.2621 -1.3614 7 14 2.0940 4.0547 -0.0466 8 1 3.2397 4.4181 -0.9185 9 1 1.0117 5.0588 -0.2072 10 1 2.5387 4.0284 1.3700 11 6 2.1038 -1.3051 -0.0006 12 1 1.4100 -2.1456 0.0116 13 6 3.0368 -1.3910 -1.2292 14 6 4.4512 -1.5069 -0.6190 15 8 4.2398 -2.0509 0.7021 16 6 3.0649 -1.3792 1.2066 17 1 -0.5400 0.9300 0.0997 18 1 -0.5401 -0.9300 -0.0995 19 1 0.0399 3.0601 -1.7280 20 1 2.8041 -2.2740 -1.8245 21 1 2.9534 -0.4894 -1.8359 22 1 5.0668 -2.1822 -1.2134 23 1 4.9183 -0.5242 -0.5544 24 1 3.3193 -0.3769 1.5511 25 1 2.6154 -1.9564 2.0145 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260473533.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:21 Heat of formation + Delta-G solvation = -58.806252 kcal Electronic energy + Delta-G solvation = -9734.152158 eV Core-core repulsion = 7904.920786 eV Total energy + Delta-G solvation = -1829.231372 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.30817 -36.67106 -33.91268 -31.13862 -29.25898 -27.21001 -23.69542 -22.50643 -20.89871 -17.70629 -17.14678 -17.12584 -16.11817 -15.95879 -14.68222 -14.62069 -13.84492 -13.54668 -12.95197 -12.78359 -12.58398 -12.27418 -12.15666 -11.76118 -11.52676 -11.10865 -10.85585 -10.63489 -9.31635 -8.51139 -6.21492 1.30519 1.39623 1.51085 2.05679 2.28090 3.12203 3.29578 3.99423 4.08297 4.30347 4.41522 4.52996 4.85560 4.88037 4.95807 5.06588 5.16279 5.31386 5.36262 5.50882 5.89496 6.09613 6.27307 6.89627 7.14979 7.38807 8.52283 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.057198 B = 0.016782 C = 0.014933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.409762 B = 1668.086864 C = 1874.637258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.381 4.381 2 C 0.043 3.957 3 C -0.499 4.499 4 H 0.067 0.933 5 C 0.035 3.965 6 N -0.832 5.832 7 Si 0.963 3.037 8 H -0.262 1.262 9 H -0.275 1.275 10 H -0.261 1.261 11 C -0.088 4.088 12 H 0.063 0.937 13 C -0.136 4.136 14 C 0.052 3.948 15 O -0.395 6.395 16 C 0.061 3.939 17 H 0.057 0.943 18 H 0.046 0.954 19 H 0.278 0.722 20 H 0.076 0.924 21 H 0.063 0.937 22 H 0.114 0.886 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 -2.169 0.927 6.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.421 4.421 2 C 0.042 3.958 3 C -0.530 4.530 4 H 0.086 0.914 5 C -0.178 4.178 6 N -0.459 5.459 7 Si 0.785 3.215 8 H -0.186 1.186 9 H -0.200 1.200 10 H -0.185 1.185 11 C -0.107 4.107 12 H 0.082 0.918 13 C -0.174 4.174 14 C -0.025 4.025 15 O -0.315 6.315 16 C -0.016 4.016 17 H 0.076 0.924 18 H 0.064 0.936 19 H 0.088 0.912 20 H 0.095 0.905 21 H 0.082 0.918 22 H 0.132 0.868 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.004 -2.221 0.883 6.462 hybrid contribution -0.457 1.020 -0.161 1.129 sum 5.547 -1.201 0.722 5.721 Atomic orbital electron populations 1.23093 0.95237 0.96403 1.27398 1.18600 0.92810 0.92010 0.92408 1.19265 1.01760 0.94034 1.37948 0.91448 1.26638 0.94444 1.04435 0.92308 1.69911 1.21631 1.32033 1.22289 0.85519 0.78715 0.77306 0.79956 1.18627 1.19994 1.18473 1.21616 0.96968 0.96575 0.95493 0.91814 1.22840 0.94826 1.02014 0.97688 1.23468 0.96475 0.99166 0.83353 1.88970 1.46907 1.64049 1.31550 1.23425 0.84573 0.97234 0.96328 0.92411 0.93578 0.91175 0.90521 0.91817 0.86828 0.92650 0.92485 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.38 -21.56 12.93 67.08 0.87 -20.69 15 2 C 0.04 2.30 4.56 -20.16 -0.09 2.21 15 3 C -0.50 -26.85 7.80 23.22 0.18 -26.67 15 4 H 0.07 3.48 6.90 -2.91 -0.02 3.46 15 5 C 0.04 1.86 5.00 85.37 0.43 2.29 15 6 N -0.83 -46.49 11.30 21.89 0.25 -46.24 15 7 Si 0.96 40.14 29.61 68.60 2.03 42.17 15 8 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 9 H -0.28 -11.15 7.11 99.48 0.71 -10.44 15 10 H -0.26 -10.64 7.11 99.48 0.71 -9.94 15 11 C -0.09 -3.85 3.33 -10.53 -0.04 -3.88 15 12 H 0.06 2.72 7.90 -2.39 -0.02 2.71 15 13 C -0.14 -5.30 6.52 31.61 0.21 -5.10 15 14 C 0.05 1.75 7.63 72.48 0.55 2.30 15 15 O -0.40 -14.82 11.65 -148.98 -1.74 -16.55 15 16 C 0.06 2.39 7.10 72.48 0.51 2.91 15 17 H 0.06 3.52 6.45 -2.91 -0.02 3.50 15 18 H 0.05 2.47 7.94 -2.91 -0.02 2.45 15 19 H 0.28 14.28 8.29 -92.71 -0.77 13.51 15 20 H 0.08 2.64 8.14 -2.38 -0.02 2.62 15 21 H 0.06 2.80 7.35 -2.39 -0.02 2.78 15 22 H 0.11 3.04 8.14 -2.39 -0.02 3.02 15 23 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 24 H 0.06 2.38 6.50 -2.39 -0.02 2.36 15 25 H 0.10 3.40 8.14 -2.39 -0.02 3.38 15 Total: -1.00 -59.96 212.64 4.32 -55.64 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.16 Total: 11.62 kcal Atomic # 6 Polarization: -49.26 SS G_CDS: 2.62 Total: -46.64 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.25 Total: -46.24 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -1.74 Total: -16.55 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -59.96 4.32 -55.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260473533.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.166 kcal (2) G-P(sol) polarization free energy of solvation -59.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds