Wall clock time and date at job start Mon Mar 30 2020 01:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35034 * 1 3 3 C 1.40076 * 120.00231 * 2 1 4 4 H 1.08005 * 119.99814 * 203.16560 * 3 2 1 5 5 C 1.40304 * 120.00038 * 23.15813 * 3 2 1 6 6 N 1.30692 * 119.99819 * 19.25266 * 5 3 2 7 7 Si 1.86793 * 120.00129 * 199.24404 * 5 3 2 8 8 H 1.48498 * 109.47105 * 90.00583 * 7 5 3 9 9 H 1.48496 * 109.47208 * 210.00333 * 7 5 3 10 10 H 1.48499 * 109.47230 * 330.00437 * 7 5 3 11 11 C 1.50701 * 119.99878 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.41958 * 4.14411 * 11 2 1 13 13 C 1.54473 * 110.37400 * 241.83623 * 11 2 1 14 14 C 1.54513 * 104.06688 * 217.18973 * 13 11 2 15 15 C 1.54478 * 104.05617 * 359.97438 * 14 13 11 16 16 O 1.44425 * 104.80667 * 23.98504 * 15 14 13 17 17 H 1.08003 * 119.99745 * 5.81671 * 1 2 3 18 18 H 1.07999 * 120.00386 * 185.81403 * 1 2 3 19 19 H 0.97002 * 119.99803 * 179.97438 * 6 5 3 20 20 H 1.08997 * 110.51216 * 335.83650 * 13 11 2 21 21 H 1.09006 * 110.51448 * 98.40426 * 13 11 2 22 22 H 1.08995 * 110.51132 * 118.64127 * 14 13 11 23 23 H 1.08997 * 110.50728 * 241.22176 * 14 13 11 24 24 H 1.08995 * 110.37532 * 265.14603 * 15 14 13 25 25 H 1.09004 * 110.36859 * 142.81290 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0508 1.2131 0.0000 4 1 3.0655 1.2507 -0.3680 5 6 1.4341 2.3792 0.4778 6 7 0.3859 2.2932 1.2536 7 14 2.1114 4.0547 0.0054 8 1 1.4570 4.5187 -1.2443 9 1 1.8386 5.0244 1.0964 10 1 3.5769 3.9530 -0.2115 11 6 2.1038 -1.3051 0.0006 12 1 1.4116 -2.1439 -0.0729 13 6 2.9646 -1.4286 1.2773 14 6 4.2553 -2.1271 0.7939 15 6 4.0212 -2.3435 -0.7176 16 8 3.0515 -1.3396 -1.0884 17 1 -0.5400 0.9305 -0.0948 18 1 -0.5401 -0.9305 0.0947 19 1 -0.0403 3.0994 1.5843 20 1 3.1925 -0.4422 1.6811 21 1 2.4551 -2.0375 2.0242 22 1 5.1212 -1.4859 0.9587 23 1 4.3860 -3.0822 1.3025 24 1 3.6232 -3.3415 -0.9009 25 1 4.9494 -2.1969 -1.2701 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260518206.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:17 Heat of formation + Delta-G solvation = -37.397758 kcal Electronic energy + Delta-G solvation = -9692.421458 eV Core-core repulsion = 7864.118428 eV Total energy + Delta-G solvation = -1828.303030 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.55300 -34.37767 -31.34379 -30.91133 -27.04906 -25.03504 -22.04883 -20.57907 -19.04010 -16.00547 -15.43473 -15.09268 -14.44080 -14.15822 -12.95961 -12.67302 -12.16352 -11.34470 -11.27175 -11.00414 -10.85710 -10.66438 -10.32287 -10.01771 -9.52134 -9.46696 -8.89413 -8.70896 -7.29697 -6.38692 -3.98683 3.14920 3.26090 3.30315 4.02781 4.22314 4.85789 5.36064 5.38446 5.56173 5.63904 5.94308 6.02443 6.25294 6.32496 6.46077 6.58312 6.85271 7.11398 7.45589 7.63988 7.76007 8.33543 8.53827 9.04725 9.33592 9.49768 10.60903 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.061365 B = 0.015904 C = 0.014445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.179676 B = 1760.145290 C = 1937.974706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.345 4.345 2 C 0.035 3.965 3 C -0.457 4.457 4 H 0.067 0.933 5 C 0.073 3.927 6 N -0.802 5.802 7 Si 0.895 3.105 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.266 1.266 11 C 0.116 3.884 12 H 0.047 0.953 13 C -0.140 4.140 14 C -0.154 4.154 15 C 0.041 3.959 16 O -0.363 6.363 17 H 0.094 0.906 18 H 0.040 0.960 19 H 0.270 0.730 20 H 0.087 0.913 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.046 0.954 25 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 -4.555 0.068 7.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.387 4.387 2 C 0.034 3.966 3 C -0.488 4.488 4 H 0.085 0.915 5 C -0.141 4.141 6 N -0.430 5.430 7 Si 0.720 3.280 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.190 1.190 11 C 0.059 3.941 12 H 0.065 0.935 13 C -0.178 4.178 14 C -0.192 4.192 15 C -0.037 4.037 16 O -0.282 6.282 17 H 0.112 0.888 18 H 0.059 0.941 19 H 0.081 0.919 20 H 0.106 0.894 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.300 -4.289 0.020 6.818 hybrid contribution 0.259 0.639 0.114 0.698 sum 5.559 -3.651 0.133 6.651 Atomic orbital electron populations 1.23307 0.94231 0.97831 1.23309 1.18210 0.92695 0.89937 0.95799 1.19043 1.00201 0.92270 1.37314 0.91524 1.25767 0.94663 1.00538 0.93144 1.69847 1.19003 1.29839 1.24278 0.86550 0.80201 0.82337 0.78868 1.19762 1.20873 1.19045 1.22153 0.89681 0.97982 0.84328 0.93493 1.22922 0.94494 1.01889 0.98474 1.22933 0.99400 1.00306 0.96575 1.23276 0.93359 0.92407 0.94611 1.89225 1.38898 1.57399 1.42667 0.88790 0.94150 0.91902 0.89404 0.92010 0.91320 0.91773 0.93530 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.35 -9.89 12.96 29.59 0.38 -9.51 15 2 C 0.04 0.99 4.89 -105.07 -0.51 0.47 15 3 C -0.46 -13.12 8.07 -38.12 -0.31 -13.42 15 4 H 0.07 1.91 7.88 -52.48 -0.41 1.50 15 5 C 0.07 2.03 5.06 -17.26 -0.09 1.94 15 6 N -0.80 -22.74 11.04 55.57 0.61 -22.12 15 7 Si 0.89 20.62 29.60 -169.99 -5.03 15.58 15 8 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 11 C 0.12 2.74 3.48 -27.11 -0.09 2.65 15 12 H 0.05 1.07 7.91 -51.93 -0.41 0.66 15 13 C -0.14 -2.87 6.56 -25.16 -0.16 -3.04 15 14 C -0.15 -2.56 7.09 -25.16 -0.18 -2.74 15 15 C 0.04 0.71 7.63 37.93 0.29 1.00 15 16 O -0.36 -8.43 11.12 -35.23 -0.39 -8.82 15 17 H 0.09 2.85 6.19 -52.48 -0.33 2.53 15 18 H 0.04 1.08 7.95 -52.49 -0.42 0.66 15 19 H 0.27 7.04 8.29 -40.82 -0.34 6.70 15 20 H 0.09 1.99 7.27 -51.93 -0.38 1.62 15 21 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.07 1.09 8.14 -51.93 -0.42 0.66 15 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 215.01 15.07 3.24 3.24 Total: -1.00 -30.15 215.01 -5.44 -35.59 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.19 Total: -0.83 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -0.67 Total: -22.64 kcal Atomic # 7 Polarization: -22.74 SS G_CDS: 0.61 Total: -22.12 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.39 Total: -8.82 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -30.15 -5.44 -35.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518206.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.809 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds