Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47533 * 2 1 4 4 H 1.09002 * 109.46881 * 305.79697 * 3 2 1 5 5 C 1.53001 * 109.46863 * 65.79476 * 3 2 1 6 6 C 1.50706 * 109.46684 * 185.00225 * 5 3 2 7 7 H 1.07998 * 120.00232 * 0.02562 * 6 5 3 8 8 C 1.37880 * 119.99702 * 179.97438 * 6 5 3 9 9 N 1.31517 * 119.99739 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99907 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47177 * 89.99776 * 10 8 6 12 12 H 1.48503 * 109.46612 * 209.99650 * 10 8 6 13 13 H 1.48502 * 109.47283 * 329.99395 * 10 8 6 14 14 C 1.52991 * 109.47118 * 185.79622 * 3 2 1 15 15 C 1.53005 * 117.50212 * 64.93873 * 14 3 2 16 16 C 1.53003 * 60.03292 * 107.47460 * 15 14 3 17 17 H 1.09005 * 109.46868 * 54.12151 * 1 2 3 18 18 H 1.08998 * 109.47383 * 174.12069 * 1 2 3 19 19 H 1.08998 * 109.47089 * 294.12553 * 1 2 3 20 20 H 1.09003 * 109.47264 * 239.99280 * 2 1 3 21 21 H 1.09004 * 109.46688 * 120.00046 * 2 1 3 22 22 H 1.09002 * 109.47333 * 305.00015 * 5 3 2 23 23 H 1.08996 * 109.47388 * 65.00445 * 5 3 2 24 24 H 0.97002 * 119.99580 * 180.02562 * 9 8 6 25 25 H 1.09000 * 115.55089 * 279.26690 * 14 3 2 26 26 H 1.08994 * 117.49757 * 214.97713 * 15 14 3 27 27 H 1.08994 * 117.49678 * 359.97438 * 15 14 3 28 28 H 1.08998 * 117.49626 * 107.49887 * 16 15 14 29 29 H 1.09000 * 117.50249 * 252.52344 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5945 1.9854 -0.8336 5 6 1.6525 2.1205 1.3157 6 6 2.0460 3.5744 1.2665 7 1 2.5243 3.9749 0.3849 8 6 1.7945 4.3935 2.3467 9 7 2.1384 5.6622 2.3040 10 14 0.9666 3.7010 3.8713 11 1 2.0007 3.1968 4.8103 12 1 0.1754 4.7692 4.5333 13 1 0.0656 2.5865 3.4823 14 6 3.5631 1.4449 -0.1457 15 6 4.1484 0.9128 -1.4554 16 6 4.1744 2.4140 -1.1608 17 1 -0.3633 0.6023 -0.8327 18 1 -0.3634 -1.0222 -0.1053 19 1 -0.3633 0.4200 0.9379 20 1 1.8934 -0.5140 -0.8899 21 1 1.8933 -0.5139 0.8900 22 1 0.5754 2.0404 1.4622 23 1 2.1689 1.6321 2.1420 24 1 1.9618 6.2384 3.0641 25 1 4.1232 1.2546 0.7698 26 1 5.0937 0.3729 -1.4015 27 1 3.4484 0.5607 -2.2130 28 1 5.1368 2.8616 -0.9131 29 1 3.4912 3.0494 -1.7244 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260563831.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = -3.372346 kcal Electronic energy + Delta-G solvation = -9784.475077 eV Core-core repulsion = 8093.480595 eV Total energy + Delta-G solvation = -1690.994483 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.71243 -33.89288 -32.36913 -29.34738 -25.66274 -22.22891 -21.50854 -20.92599 -18.86839 -16.63970 -15.02768 -14.34552 -14.06689 -13.51025 -12.94982 -12.43148 -12.02052 -11.92467 -11.24519 -11.00129 -10.97943 -10.58325 -10.47319 -9.98600 -9.79701 -9.60155 -9.51609 -8.94590 -8.83306 -8.45012 -5.95567 -3.91175 3.34823 3.42296 3.46083 4.51491 4.52715 5.28363 5.39905 5.54517 5.58966 5.66882 5.83381 5.85526 6.10891 6.21330 6.34072 6.44976 6.51939 6.56466 6.62920 6.71748 6.77469 7.00915 7.07127 7.39986 7.53485 7.89802 8.66161 9.13108 9.68133 11.18106 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.042641 B = 0.017037 C = 0.013155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.486114 B = 1643.129614 C = 2127.968393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.046 4.046 4 H 0.061 0.939 5 C -0.009 4.009 6 C -0.508 4.508 7 H 0.076 0.924 8 C 0.063 3.937 9 N -0.907 5.907 10 Si 0.875 3.125 11 H -0.279 1.279 12 H -0.290 1.290 13 H -0.266 1.266 14 C -0.113 4.113 15 C -0.202 4.202 16 C -0.167 4.167 17 H 0.051 0.949 18 H 0.042 0.958 19 H 0.058 0.942 20 H 0.050 0.950 21 H 0.054 0.946 22 H 0.019 0.981 23 H 0.009 0.991 24 H 0.260 0.740 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.027 -9.652 -4.035 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.064 4.064 4 H 0.080 0.920 5 C -0.046 4.046 6 C -0.546 4.546 7 H 0.094 0.906 8 C -0.137 4.137 9 N -0.547 5.547 10 Si 0.703 3.297 11 H -0.205 1.205 12 H -0.216 1.216 13 H -0.191 1.191 14 C -0.131 4.131 15 C -0.239 4.239 16 C -0.204 4.204 17 H 0.070 0.930 18 H 0.061 0.939 19 H 0.077 0.923 20 H 0.069 0.931 21 H 0.073 0.927 22 H 0.037 0.963 23 H 0.027 0.973 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.035 -9.488 -3.932 10.271 hybrid contribution -0.332 -0.129 0.930 0.996 sum -0.367 -9.618 -3.002 10.082 Atomic orbital electron populations 1.21803 0.96601 1.00129 1.02255 1.21572 0.95243 0.97900 1.00762 1.20712 0.91594 0.93689 1.00412 0.92038 1.19668 0.96196 0.96452 0.92268 1.21216 1.38562 0.92126 1.02721 0.90583 1.25033 0.95520 0.94754 0.98395 1.69922 1.48589 1.04986 1.31220 0.86846 0.80159 0.78912 0.83772 1.20515 1.21584 1.19089 1.22150 0.96250 1.02380 0.92315 1.22960 1.02102 0.97575 1.01279 1.22818 1.02269 0.91464 1.03895 0.93015 0.93909 0.92327 0.93080 0.92682 0.96316 0.97256 0.92984 0.88616 0.90019 0.89707 0.89684 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.54 37.16 0.35 -2.00 15 2 C -0.12 -1.96 5.35 -26.73 -0.14 -2.10 15 3 C -0.05 -0.91 1.91 -90.62 -0.17 -1.09 15 4 H 0.06 1.28 7.94 -51.93 -0.41 0.87 15 5 C -0.01 -0.21 3.39 -27.88 -0.09 -0.30 15 6 C -0.51 -14.45 9.16 -34.44 -0.32 -14.76 15 7 H 0.08 2.31 7.26 -52.49 -0.38 1.93 15 8 C 0.06 1.86 5.47 -17.82 -0.10 1.76 15 9 N -0.91 -28.31 13.96 55.43 0.77 -27.54 15 10 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 15 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 13 H -0.27 -6.45 6.54 56.52 0.37 -6.08 15 14 C -0.11 -2.15 4.48 -90.58 -0.41 -2.56 15 15 C -0.20 -3.20 9.72 -26.73 -0.26 -3.46 15 16 C -0.17 -3.07 9.55 -26.69 -0.25 -3.32 15 17 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 18 H 0.04 0.56 8.14 -51.93 -0.42 0.14 15 19 H 0.06 0.99 6.77 -51.93 -0.35 0.64 15 20 H 0.05 0.77 7.46 -51.93 -0.39 0.38 15 21 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 22 H 0.02 0.45 5.56 -51.93 -0.29 0.16 15 23 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 15 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 25 H 0.10 1.89 8.14 -51.93 -0.42 1.46 15 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 15 27 H 0.08 1.26 7.90 -51.93 -0.41 0.85 15 28 H 0.08 1.51 8.14 -51.93 -0.42 1.08 15 29 H 0.09 1.71 8.08 -51.93 -0.42 1.29 15 LS Contribution 236.45 15.07 3.56 3.56 Total: -1.00 -29.88 236.45 -6.47 -36.35 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.75 Total: -1.96 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -1.39 Total: -27.83 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.77 Total: -27.54 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.88 -6.47 -36.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260563831.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.978 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds