Wall clock time and date at job start Mon Mar 30 2020 02:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46757 * 2 1 4 4 N 1.28700 * 122.93086 * 359.97438 * 3 2 1 5 5 C 1.47605 * 108.51054 * 179.56258 * 4 3 2 6 6 C 1.54850 * 101.92892 * 345.08857 * 5 4 3 7 7 H 1.09004 * 111.07786 * 265.24973 * 6 5 4 8 8 C 1.50695 * 111.07871 * 141.24290 * 6 5 4 9 9 H 1.08002 * 119.99820 * 0.02562 * 8 6 5 10 10 C 1.37874 * 119.99905 * 179.97438 * 8 6 5 11 11 N 1.31513 * 120.00384 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 119.99998 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47082 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46885 * 120.00240 * 12 10 8 15 15 H 1.48501 * 109.47151 * 240.00563 * 12 10 8 16 16 O 1.34604 * 122.93496 * 179.97438 * 3 2 1 17 17 H 1.08995 * 109.46750 * 179.97438 * 1 2 3 18 18 H 1.08996 * 109.47202 * 299.99836 * 1 2 3 19 19 H 1.09000 * 109.47319 * 60.00055 * 1 2 3 20 20 H 1.08996 * 109.47202 * 240.00164 * 2 1 3 21 21 H 1.09000 * 109.47319 * 119.99945 * 2 1 3 22 22 H 1.09002 * 110.94520 * 226.91985 * 5 4 3 23 23 H 1.08997 * 110.94565 * 103.25861 * 5 4 3 24 24 H 0.97005 * 120.00391 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 1.2470 2.4405 -0.0005 5 6 2.0700 3.6658 0.0104 6 6 3.4612 3.1134 0.4068 7 1 3.6226 3.1924 1.4819 8 6 4.5584 3.8106 -0.3555 9 1 4.3135 4.5850 -1.0673 10 6 5.8750 3.4605 -0.1435 11 7 6.1733 2.5178 0.7237 12 14 7.2352 4.3252 -1.0878 13 1 6.6404 5.3394 -1.9949 14 1 8.1533 4.9946 -0.1317 15 1 7.9931 3.3293 -1.8873 16 8 3.3413 1.7344 0.0005 17 1 -0.3633 -1.0276 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.8934 -0.5138 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 1.7052 4.3736 0.7548 23 1 2.0998 4.1239 -0.9782 24 1 7.0996 2.2712 0.8726 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260701123.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:09 Heat of formation + Delta-G solvation = -50.985962 kcal Electronic energy + Delta-G solvation = -9661.152339 eV Core-core repulsion = 7766.834170 eV Total energy + Delta-G solvation = -1894.318169 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.60573 -35.53296 -34.58168 -33.64230 -30.49139 -26.85328 -24.83358 -23.19403 -20.42119 -18.99048 -17.26798 -17.05388 -16.68307 -15.71915 -14.97468 -14.19848 -13.90883 -13.68392 -13.29820 -13.11761 -12.84205 -12.45873 -12.34894 -12.12069 -11.82277 -11.45355 -10.87419 -10.81317 -9.74312 -8.35909 -6.61261 1.36076 1.37553 1.41245 1.52651 2.30715 2.65792 3.17429 3.51540 4.15446 4.30686 4.42707 4.44531 4.55457 4.66347 4.95358 5.09931 5.17386 5.34049 5.46850 5.52195 5.74812 6.00994 6.53377 7.08106 7.18980 8.73384 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.091669 B = 0.013014 C = 0.012110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 305.372219 B = 2151.076935 C = 2311.624002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.052 4.052 3 C 0.275 3.725 4 N -0.581 5.581 5 C 0.005 3.995 6 C 0.173 3.827 7 H 0.023 0.977 8 C -0.558 4.558 9 H 0.073 0.927 10 C 0.024 3.976 11 N -0.901 5.901 12 Si 0.978 3.022 13 H -0.261 1.261 14 H -0.269 1.269 15 H -0.275 1.275 16 O -0.363 6.363 17 H 0.092 0.908 18 H 0.050 0.950 19 H 0.051 0.949 20 H 0.104 0.896 21 H 0.102 0.898 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.441 -3.311 -1.597 6.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.090 4.090 3 C 0.051 3.949 4 N -0.321 5.321 5 C -0.125 4.125 6 C 0.119 3.881 7 H 0.041 0.959 8 C -0.595 4.595 9 H 0.091 0.909 10 C -0.179 4.179 11 N -0.537 5.537 12 Si 0.801 3.199 13 H -0.185 1.185 14 H -0.194 1.194 15 H -0.201 1.201 16 O -0.266 6.266 17 H 0.110 0.890 18 H 0.069 0.931 19 H 0.070 0.930 20 H 0.122 0.878 21 H 0.121 0.879 22 H 0.108 0.892 23 H 0.092 0.908 24 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.952 -3.233 -1.556 6.950 hybrid contribution 1.617 0.662 -0.135 1.753 sum -4.335 -2.572 -1.691 5.316 Atomic orbital electron populations 1.21498 0.91522 1.02812 1.02333 1.20478 0.98217 0.85063 1.05204 1.26669 0.81749 0.99014 0.87475 1.74564 1.31330 0.98620 1.27542 1.23892 0.91326 0.95509 1.01765 1.21626 0.94791 0.76520 0.95201 0.95913 1.21376 0.91100 1.20622 1.26414 0.90882 1.26133 1.01788 0.94845 0.95167 1.70136 1.20027 1.29646 1.33879 0.85219 0.77775 0.78425 0.78499 1.18456 1.19420 1.20073 1.87285 1.24430 1.34472 1.80400 0.88968 0.93111 0.92985 0.87805 0.87946 0.89219 0.90848 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.24 71.98 0.67 -2.51 14 2 C -0.05 -1.61 6.56 29.85 0.20 -1.41 14 3 C 0.28 12.25 7.69 88.57 0.68 12.93 14 4 N -0.58 -26.13 10.77 -449.34 -4.84 -30.97 14 5 C 0.00 0.21 7.68 86.80 0.67 0.88 14 6 C 0.17 9.60 3.48 30.48 0.11 9.71 14 7 H 0.02 1.37 8.14 -2.38 -0.02 1.35 14 8 C -0.56 -32.07 8.83 25.60 0.23 -31.84 14 9 H 0.07 4.03 7.61 -2.91 -0.02 4.01 14 10 C 0.02 1.37 5.46 84.65 0.46 1.83 14 11 N -0.90 -53.58 13.23 21.45 0.28 -53.29 14 12 Si 0.98 43.15 29.54 68.60 2.03 45.18 14 13 H -0.26 -11.03 7.11 99.48 0.71 -10.32 14 14 H -0.27 -11.33 7.11 99.48 0.71 -10.63 14 15 H -0.28 -11.87 7.11 99.48 0.71 -11.16 14 16 O -0.36 -19.91 10.82 -78.69 -0.85 -20.76 14 17 H 0.09 1.67 8.14 -2.39 -0.02 1.65 14 18 H 0.05 1.39 8.13 -2.39 -0.02 1.37 14 19 H 0.05 1.42 8.13 -2.39 -0.02 1.40 14 20 H 0.10 2.89 8.14 -2.39 -0.02 2.87 14 21 H 0.10 2.89 8.14 -2.39 -0.02 2.87 14 22 H 0.09 3.88 8.14 -2.39 -0.02 3.86 14 23 H 0.07 3.45 7.77 -2.39 -0.02 3.43 14 24 H 0.27 14.90 8.31 -92.70 -0.77 14.13 14 Total: -1.00 -66.23 215.26 0.80 -65.43 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.17 Total: 4.83 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 3.00 Total: -10.42 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -4.56 Total: -84.26 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.85 Total: -20.76 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -66.23 0.80 -65.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260701123.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.448 kcal (2) G-P(sol) polarization free energy of solvation -66.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds