Wall clock time and date at job start Mon Mar 30 2020 02:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47187 * 2 1 4 4 N 1.28642 * 122.93830 * 0.02562 * 3 2 1 5 5 C 1.47595 * 108.54754 * 179.59276 * 4 3 2 6 6 H 1.08999 * 110.94754 * 103.19603 * 5 4 3 7 7 C 1.50703 * 110.96992 * 226.88277 * 5 4 3 8 8 H 1.08010 * 119.99905 * 112.53121 * 7 5 4 9 9 C 1.37878 * 120.00133 * 292.51796 * 7 5 4 10 10 N 1.31506 * 119.99912 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 119.99889 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47439 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46535 * 120.00530 * 11 9 7 14 14 H 1.48500 * 109.47105 * 240.00394 * 11 9 7 15 15 C 1.54847 * 101.89558 * 345.04222 * 5 4 3 16 16 O 1.34649 * 122.91916 * 179.97438 * 3 2 1 17 17 H 1.09009 * 109.47031 * 179.97438 * 1 2 3 18 18 H 1.08995 * 109.47110 * 299.99717 * 1 2 3 19 19 H 1.09000 * 109.47519 * 59.99932 * 1 2 3 20 20 H 1.09008 * 109.46913 * 239.99992 * 2 1 3 21 21 H 1.08997 * 109.46924 * 120.00503 * 2 1 3 22 22 H 0.96999 * 120.00198 * 180.02562 * 10 9 7 23 23 H 1.09002 * 111.07680 * 141.22726 * 15 5 4 24 24 H 1.08997 * 111.08003 * 265.22610 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.2476 2.4401 0.0005 5 6 2.0700 3.6657 0.0103 6 1 2.0993 4.1232 -0.9786 7 6 1.5665 4.6449 1.0393 8 1 2.1665 4.8712 1.9084 9 6 0.3401 5.2521 0.8711 10 7 -0.3905 4.9764 -0.1870 11 14 -0.2837 6.4663 2.1462 12 1 0.7193 6.6021 3.2328 13 1 -0.5012 7.7884 1.5058 14 1 -1.5648 5.9742 2.7133 15 6 3.4614 3.1133 0.4061 16 8 3.3419 1.7339 0.0005 17 1 -0.3633 -1.0278 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.8933 -0.5139 -0.8901 21 1 1.8933 -0.5139 0.8899 22 1 -1.2531 5.4038 -0.3056 23 1 4.2547 3.6171 -0.1460 24 1 3.6235 3.1930 1.4810 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260749741.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:14 Heat of formation + Delta-G solvation = -45.938185 kcal Electronic energy + Delta-G solvation = -9716.450417 eV Core-core repulsion = 7822.351136 eV Total energy + Delta-G solvation = -1894.099281 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.66217 -35.38790 -35.05014 -33.10650 -30.20103 -27.10590 -24.88260 -22.99828 -20.49758 -18.76871 -17.64316 -16.87237 -16.32078 -15.94389 -15.08619 -14.36414 -13.93485 -13.86237 -13.01581 -12.86271 -12.70921 -12.47014 -12.33303 -12.00955 -11.79984 -11.48992 -10.75304 -10.52704 -9.67004 -8.17253 -6.37541 1.38112 1.39625 1.51615 1.65398 2.37751 2.61867 3.09463 3.76033 4.19008 4.27444 4.38594 4.42762 4.58536 4.71985 4.95758 5.12732 5.20167 5.28517 5.53954 5.63791 5.82606 6.12284 6.64945 7.30125 7.37658 8.91495 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.058029 B = 0.015771 C = 0.013523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.404072 B = 1774.933214 C = 2070.009929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.036 4.036 3 C 0.227 3.773 4 N -0.517 5.517 5 C 0.144 3.856 6 H 0.022 0.978 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.025 3.975 10 N -0.897 5.897 11 Si 0.967 3.033 12 H -0.262 1.262 13 H -0.275 1.275 14 H -0.281 1.281 15 C 0.030 3.970 16 O -0.371 6.371 17 H 0.094 0.906 18 H 0.036 0.964 19 H 0.038 0.962 20 H 0.109 0.891 21 H 0.108 0.892 22 H 0.261 0.739 23 H 0.112 0.888 24 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 -7.034 1.724 7.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.002 4.002 4 N -0.250 5.250 5 C 0.037 3.963 6 H 0.040 0.960 7 C -0.584 4.584 8 H 0.082 0.918 9 C -0.178 4.178 10 N -0.533 5.533 11 Si 0.791 3.209 12 H -0.186 1.186 13 H -0.200 1.200 14 H -0.207 1.207 15 C -0.046 4.046 16 O -0.277 6.277 17 H 0.113 0.887 18 H 0.055 0.945 19 H 0.057 0.943 20 H 0.127 0.873 21 H 0.126 0.874 22 H 0.070 0.930 23 H 0.130 0.870 24 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.484 -6.797 1.558 7.402 hybrid contribution 0.314 1.134 0.379 1.236 sum 2.798 -5.663 1.938 6.607 Atomic orbital electron populations 1.21472 0.93353 1.02176 1.01483 1.20299 0.96735 0.84890 1.05425 1.26606 0.80112 0.99274 0.94191 1.74987 1.32936 0.99857 1.17218 1.21109 0.87231 0.91126 0.96825 0.96011 1.21157 1.04885 1.24425 1.07920 0.91785 1.25896 0.96627 0.97875 0.97365 1.70193 1.11852 1.42406 1.28853 0.85397 0.78208 0.78299 0.79001 1.18643 1.19998 1.20703 1.24615 1.00434 0.78997 1.00598 1.86777 1.26839 1.30440 1.83616 0.88726 0.94485 0.94301 0.87258 0.87363 0.93002 0.87013 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.24 71.98 0.67 -3.33 14 2 C -0.04 -1.09 6.56 29.85 0.20 -0.90 14 3 C 0.23 9.91 7.68 88.57 0.68 10.59 14 4 N -0.52 -27.61 10.26 -432.72 -4.44 -32.05 14 5 C 0.14 7.93 3.50 44.67 0.16 8.08 14 6 H 0.02 1.33 8.14 -2.39 -0.02 1.31 14 7 C -0.55 -31.49 8.79 25.60 0.22 -31.26 14 8 H 0.06 3.54 7.61 -2.91 -0.02 3.52 14 9 C 0.03 1.46 5.44 84.66 0.46 1.92 14 10 N -0.90 -55.06 13.15 21.45 0.28 -54.77 14 11 Si 0.97 44.60 29.54 68.60 2.03 46.63 14 12 H -0.26 -11.54 7.11 99.48 0.71 -10.84 14 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 14 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 14 15 C 0.03 1.34 7.72 72.61 0.56 1.90 14 16 O -0.37 -16.01 11.18 -79.14 -0.88 -16.89 14 17 H 0.09 2.11 8.14 -2.38 -0.02 2.09 14 18 H 0.04 1.34 8.13 -2.39 -0.02 1.32 14 19 H 0.04 1.39 8.13 -2.39 -0.02 1.37 14 20 H 0.11 2.73 8.14 -2.38 -0.02 2.71 14 21 H 0.11 2.73 8.14 -2.39 -0.02 2.71 14 22 H 0.26 15.06 8.31 -92.71 -0.77 14.29 14 23 H 0.11 4.28 8.14 -2.39 -0.02 4.26 14 24 H 0.07 3.19 7.78 -2.39 -0.02 3.17 14 Total: -1.00 -68.89 215.05 1.10 -67.78 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.17 Total: 2.29 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 2.95 Total: -12.99 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -4.16 Total: -86.82 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.88 Total: -16.89 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -68.89 1.10 -67.78 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260749741.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.846 kcal (2) G-P(sol) polarization free energy of solvation -68.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds