Wall clock time and date at job start Mon Mar 30 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30500 * 1 3 3 Si 1.86798 * 120.00212 * 2 1 4 4 H 1.48497 * 109.47510 * 270.00329 * 3 2 1 5 5 H 1.48499 * 109.46992 * 30.00205 * 3 2 1 6 6 H 1.48500 * 109.47335 * 150.00065 * 3 2 1 7 7 C 1.40464 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00298 * 179.97438 * 7 2 1 9 9 C 1.40346 * 119.99779 * 0.02562 * 7 2 1 10 10 N 1.33332 * 126.79078 * 180.28705 * 9 7 2 11 11 C 1.33573 * 105.51126 * 180.13794 * 10 9 7 12 12 C 1.50699 * 126.07214 * 179.85199 * 11 10 9 13 13 N 1.46906 * 109.47140 * 269.71892 * 12 11 10 14 14 N 1.30451 * 107.85610 * 359.59220 * 11 10 9 15 15 O 1.21280 * 110.68348 * 0.26135 * 14 11 10 16 16 H 0.97002 * 120.00421 * 359.97438 * 1 2 3 17 17 H 1.09000 * 109.47247 * 149.71914 * 12 11 10 18 18 H 1.09001 * 109.47358 * 29.71340 * 12 11 10 19 19 H 1.00896 * 111.00309 * 179.97438 * 13 12 11 20 20 H 1.00902 * 110.99923 * 303.95945 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 2.4865 2.0465 -1.4000 5 1 1.4365 2.6526 0.7001 6 1 3.5366 1.4401 0.7000 7 6 2.0073 -1.2164 -0.0005 8 1 3.0873 -1.2165 -0.0010 9 6 1.3056 -2.4319 -0.0016 10 7 1.8310 -3.6573 0.0031 11 6 0.7889 -4.4928 -0.0034 12 6 0.8585 -5.9982 -0.0047 13 7 0.8817 -6.4861 -1.3902 14 7 -0.2999 -3.7743 -0.0027 15 8 -0.0324 -2.5913 -0.0017 16 1 -0.4851 0.8400 0.0004 17 1 -0.0140 -6.4027 0.5084 18 1 1.7642 -6.3205 0.5091 19 1 0.9287 -7.4936 -1.4181 20 1 0.0841 -6.1465 -1.9065 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260818490.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:52 Heat of formation + Delta-G solvation = 43.403153 kcal Electronic energy + Delta-G solvation = -9390.183821 eV Core-core repulsion = 7396.418327 eV Total energy + Delta-G solvation = -1993.765494 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.059 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.98308 -34.96143 -34.08152 -32.61594 -30.16980 -26.50769 -25.15379 -21.56670 -20.47628 -17.61399 -15.97909 -15.57550 -15.40032 -14.58078 -13.98484 -13.55164 -12.70304 -11.94833 -11.55531 -11.44918 -11.38887 -10.50117 -10.04812 -9.91385 -9.56138 -8.86293 -8.42835 -8.21723 -7.05948 -4.98965 2.80943 2.97885 3.03981 3.27836 3.75887 3.89658 4.96319 5.13014 5.24358 5.47090 5.60828 6.01145 6.60607 6.87487 7.29954 7.50020 7.74985 7.94252 8.14907 8.35394 8.50076 9.93509 10.40924 Molecular weight = 169.06amu Principal moments of inertia in cm(-1) A = 0.122541 B = 0.012860 C = 0.012065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 228.440804 B = 2176.747804 C = 2320.137395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.070 3.930 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.416 4.416 8 H 0.113 0.887 9 C 0.300 3.700 10 N -0.602 5.602 11 C 0.160 3.840 12 C 0.167 3.833 13 N -0.840 5.840 14 N -0.474 5.474 15 O 0.046 5.954 16 H 0.292 0.708 17 H 0.037 0.963 18 H 0.087 0.913 19 H 0.339 0.661 20 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.731 -1.548 -0.164 1.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.154 4.154 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.454 4.454 8 H 0.131 0.869 9 C 0.109 3.891 10 N -0.346 5.346 11 C -0.115 4.115 12 C 0.036 3.964 13 N -0.371 5.371 14 N -0.205 5.205 15 O -0.001 6.001 16 H 0.103 0.897 17 H 0.056 0.944 18 H 0.105 0.895 19 H 0.151 0.849 20 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.789 -1.619 -0.198 1.812 hybrid contribution -0.589 0.449 0.229 0.775 sum 0.200 -1.171 0.031 1.188 Atomic orbital electron populations 1.69633 1.07793 1.30771 1.31104 1.26201 0.95116 1.02291 0.91828 0.85827 0.80101 0.78472 0.79641 1.18867 1.19747 1.17975 1.18576 0.95022 0.85477 1.46302 0.86928 1.24280 0.79920 0.94100 0.90773 1.72234 1.28407 0.98426 1.35500 1.24789 0.86521 0.97809 1.02338 1.19611 1.00679 0.86408 0.89748 1.58544 1.50630 1.14310 1.13656 1.74291 1.24794 0.91215 1.30163 1.85513 1.25829 1.17727 1.71058 0.89719 0.94448 0.89477 0.84880 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.81 12.06 55.57 0.67 -19.14 14 2 C 0.07 1.73 5.50 -17.28 -0.10 1.64 14 3 Si 0.94 17.85 29.56 -169.99 -5.03 12.82 14 4 H -0.26 -4.93 7.11 56.52 0.40 -4.52 14 5 H -0.27 -5.01 7.11 56.52 0.40 -4.60 14 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 14 7 C -0.42 -11.27 9.48 -37.95 -0.36 -11.63 14 8 H 0.11 2.88 7.85 -52.49 -0.41 2.47 14 9 C 0.30 8.83 7.82 -16.35 -0.13 8.70 14 10 N -0.60 -17.23 11.61 -11.51 -0.13 -17.36 14 11 C 0.16 4.17 7.69 -156.78 -1.21 2.97 14 12 C 0.17 3.31 7.41 -4.97 -0.04 3.27 14 13 N -0.84 -14.58 9.61 -11.40 -0.11 -14.69 14 14 N -0.47 -13.26 12.15 31.51 0.38 -12.88 14 15 O 0.05 1.37 9.74 15.14 0.15 1.51 14 16 H 0.29 6.66 8.29 -40.82 -0.34 6.32 14 17 H 0.04 0.67 8.14 -51.93 -0.42 0.24 14 18 H 0.09 1.62 8.14 -51.93 -0.42 1.20 14 19 H 0.34 4.44 9.08 -39.29 -0.36 4.08 14 20 H 0.34 5.94 8.99 -39.29 -0.35 5.59 14 LS Contribution 194.45 15.07 2.93 2.93 Total: -1.00 -31.41 194.45 -4.06 -35.47 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -1.10 Total: 6.39 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.83 Total: 4.94 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: 0.81 Total: -64.08 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.15 Total: 1.51 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 2.93 Total: 2.93 kcal Total: -31.41 -4.06 -35.47 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260818490.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.877 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds