Wall clock time and date at job start Mon Mar 30 2020 02:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47193 * 2 1 4 4 N 1.27646 * 125.76606 * 359.68814 * 3 2 1 5 5 O 1.41378 * 113.17047 * 180.58585 * 4 3 2 6 6 C 1.44256 * 107.50627 * 342.63326 * 5 4 3 7 7 H 1.08991 * 111.01159 * 267.04012 * 6 5 4 8 8 C 1.50704 * 111.00838 * 143.17113 * 6 5 4 9 9 H 1.08002 * 120.00065 * 247.83385 * 8 6 5 10 10 C 1.37878 * 119.99994 * 67.84660 * 8 6 5 11 11 N 1.31518 * 119.99993 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99882 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47568 * 89.99632 * 12 10 8 14 14 H 1.48504 * 109.46712 * 209.99541 * 12 10 8 15 15 H 1.48498 * 109.47104 * 329.99445 * 12 10 8 16 16 C 1.51686 * 125.77066 * 180.02562 * 3 2 1 17 17 H 1.08993 * 109.47126 * 179.97438 * 1 2 3 18 18 H 1.08991 * 109.46946 * 300.00309 * 1 2 3 19 19 H 1.09004 * 109.46768 * 60.00208 * 1 2 3 20 20 H 1.09001 * 109.47299 * 240.00101 * 2 1 3 21 21 H 1.08998 * 109.47422 * 119.99937 * 2 1 3 22 22 H 0.97002 * 120.00107 * 180.02562 * 11 10 8 23 23 H 1.09000 * 110.80064 * 313.25810 * 16 3 2 24 24 H 1.08996 * 110.80526 * 76.57197 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 1.3046 2.4695 -0.0056 5 8 2.0552 3.6675 -0.0172 6 6 3.3996 3.3412 0.3915 7 1 3.5238 3.4717 1.4664 8 6 4.4097 4.1601 -0.3703 9 1 5.0699 3.6811 -1.0782 10 6 4.4912 5.5208 -0.1633 11 7 3.6871 6.1042 0.6986 12 14 5.7437 6.5357 -1.1070 13 1 5.1378 7.0157 -2.3750 14 1 6.1578 7.7006 -0.2843 15 1 6.9312 5.6978 -1.4118 16 6 3.4883 1.8466 -0.0006 17 1 -0.3633 -1.0276 -0.0005 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 1.8934 -0.5138 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 3.7441 7.0616 0.8439 23 1 4.0561 1.2849 0.7412 24 1 3.9258 1.7283 -0.9918 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260889344.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:18 Heat of formation + Delta-G solvation = 2.793097 kcal Electronic energy + Delta-G solvation = -9576.778852 eV Core-core repulsion = 7684.792718 eV Total energy + Delta-G solvation = -1891.986134 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.74544 -34.10337 -32.65485 -29.98909 -29.40234 -25.31429 -23.63597 -20.93034 -18.54978 -16.76144 -15.21272 -14.74763 -14.55142 -14.16182 -13.26974 -12.83052 -12.02225 -11.82373 -11.67230 -11.31863 -11.03856 -10.84424 -10.82438 -10.61137 -9.80833 -9.60065 -9.32326 -8.66520 -7.96362 -6.15103 -4.30524 2.84070 3.26056 3.32128 3.34557 4.30750 4.40329 4.93406 5.14907 5.41694 5.52421 5.71422 5.97695 6.02882 6.12365 6.16774 6.28039 6.46542 6.64957 7.08317 7.39035 7.74723 8.03637 8.64932 8.88394 9.41545 10.92926 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.113604 B = 0.011915 C = 0.011312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 246.411214 B = 2349.468467 C = 2474.611590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C 0.041 3.959 4 N -0.316 5.316 5 O -0.182 6.182 6 C 0.176 3.824 7 H 0.046 0.954 8 C -0.535 4.535 9 H 0.068 0.932 10 C 0.076 3.924 11 N -0.864 5.864 12 Si 0.902 3.098 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.271 1.271 16 C -0.143 4.143 17 H 0.053 0.947 18 H 0.058 0.942 19 H 0.059 0.941 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.266 0.734 23 H 0.074 0.926 24 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.922 -9.397 -0.908 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.152 4.152 4 N -0.055 5.055 5 O -0.205 6.205 6 C 0.120 3.880 7 H 0.063 0.937 8 C -0.573 4.573 9 H 0.086 0.914 10 C -0.131 4.131 11 N -0.500 5.500 12 Si 0.728 3.272 13 H -0.202 1.202 14 H -0.209 1.209 15 H -0.196 1.196 16 C -0.182 4.182 17 H 0.072 0.928 18 H 0.078 0.922 19 H 0.078 0.922 20 H 0.100 0.900 21 H 0.099 0.901 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.058 -8.628 -0.864 8.912 hybrid contribution 1.598 0.408 -0.400 1.697 sum -0.459 -8.220 -1.264 8.329 Atomic orbital electron populations 1.21644 0.94630 1.00893 1.03135 1.20051 0.96484 0.89405 1.02771 1.25989 0.94903 0.95689 0.98652 1.77380 1.23928 0.94881 1.09314 1.91455 1.23581 1.18486 1.86999 1.21261 0.81818 0.88147 0.96762 0.93666 1.20980 1.17164 0.93015 1.26189 0.91399 1.25141 0.95438 0.98049 0.94469 1.70023 1.36269 1.10922 1.32746 0.86447 0.81159 0.79647 0.79912 1.20247 1.20863 1.19559 1.23176 0.93258 0.98901 1.02886 0.92763 0.92248 0.92195 0.89994 0.90064 0.92416 0.90751 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.38 37.16 0.35 -1.60 14 2 C -0.05 -0.69 6.54 -27.88 -0.18 -0.87 14 3 C 0.04 0.83 7.17 -78.57 -0.56 0.26 14 4 N -0.32 -7.67 11.71 35.65 0.42 -7.25 14 5 O -0.18 -5.31 12.14 -11.36 -0.14 -5.45 14 6 C 0.18 4.79 3.54 -26.95 -0.10 4.69 14 7 H 0.05 1.31 8.14 -51.93 -0.42 0.88 14 8 C -0.54 -15.28 8.83 -34.44 -0.30 -15.58 14 9 H 0.07 1.84 7.62 -52.49 -0.40 1.45 14 10 C 0.08 2.18 5.46 -17.82 -0.10 2.08 14 11 N -0.86 -26.14 13.21 55.43 0.73 -25.41 14 12 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 14 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 14 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 14 16 C -0.14 -3.05 6.61 -26.46 -0.17 -3.23 14 17 H 0.05 0.56 8.14 -51.93 -0.42 0.14 14 18 H 0.06 0.86 8.14 -51.93 -0.42 0.44 14 19 H 0.06 0.87 8.14 -51.93 -0.42 0.45 14 20 H 0.08 0.99 8.14 -51.93 -0.42 0.56 14 21 H 0.08 0.97 8.14 -51.93 -0.42 0.55 14 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 14 23 H 0.07 1.37 8.14 -51.93 -0.42 0.95 14 24 H 0.08 1.75 7.78 -51.93 -0.40 1.35 14 LS Contribution 216.14 15.07 3.26 3.26 Total: -1.00 -32.20 216.14 -4.72 -36.92 By element: Atomic # 1 Polarization: -1.32 SS G_CDS: -2.90 Total: -4.22 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.07 Total: -14.25 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 1.15 Total: -32.66 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.14 Total: -5.45 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -32.20 -4.72 -36.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889344.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.711 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds