Wall clock time and date at job start Mon Mar 30 2020 02:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.05652 * 2 1 4 4 C 1.54259 * 110.03190 * 238.58345 * 2 1 3 5 5 C 1.54893 * 104.19778 * 217.10442 * 4 2 1 6 6 C 1.54888 * 102.74582 * 37.94363 * 5 4 2 7 7 H 1.08999 * 110.60184 * 80.79409 * 6 5 4 8 8 C 1.52999 * 110.48414 * 203.38206 * 6 5 4 9 9 C 1.53874 * 110.03192 * 121.41620 * 2 1 3 10 10 C 1.50702 * 110.03348 * 0.02562 * 9 2 1 11 11 H 1.07998 * 119.99974 * 81.90388 * 10 9 2 12 12 C 1.37881 * 119.99575 * 261.90625 * 10 9 2 13 13 N 1.31513 * 120.00298 * 7.47115 * 12 10 9 14 14 Si 1.86804 * 119.99702 * 187.47775 * 12 10 9 15 15 H 1.48499 * 109.47074 * 179.97438 * 14 12 10 16 16 H 1.48503 * 109.46822 * 299.99530 * 14 12 10 17 17 H 1.48496 * 109.47464 * 59.99525 * 14 12 10 18 18 H 1.09004 * 109.47390 * 298.01495 * 1 2 3 19 19 H 1.08996 * 109.47420 * 58.01688 * 1 2 3 20 20 H 1.09000 * 109.47344 * 178.02328 * 1 2 3 21 21 H 1.08996 * 110.48833 * 98.42836 * 4 2 1 22 22 H 1.09000 * 110.49137 * 335.78242 * 4 2 1 23 23 H 1.08999 * 110.75790 * 279.63093 * 5 4 2 24 24 H 1.09003 * 110.91670 * 156.32931 * 5 4 2 25 25 H 1.09000 * 109.47155 * 174.77830 * 8 6 5 26 26 H 1.09006 * 109.46994 * 294.77025 * 8 6 5 27 27 H 1.08998 * 109.47553 * 54.77321 * 8 6 5 28 28 H 1.09002 * 110.07195 * 238.59137 * 9 2 1 29 29 H 0.96998 * 120.00128 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2368 5 6 3.3137 -1.5007 -0.7191 6 6 2.8874 -1.9407 0.7035 7 1 2.2778 -2.8431 0.6593 8 6 4.1174 -2.1695 1.5842 9 6 2.0571 -0.7535 1.2337 10 6 0.9037 -1.2597 2.0612 11 1 0.4061 -2.1787 1.7889 12 6 0.4839 -0.5494 3.1659 13 7 0.9887 0.6393 3.4142 14 14 -0.8018 -1.2758 4.3100 15 1 -1.0780 -0.3215 5.4137 16 1 -2.0524 -1.5307 3.5508 17 1 -0.2968 -2.5528 4.8751 18 1 -0.3634 0.4827 0.9073 19 1 -0.3634 0.5443 -0.8716 20 1 -0.3634 -1.0270 -0.0354 21 1 2.3297 -0.0536 -2.0254 22 1 1.3142 -1.4660 -1.5966 23 1 4.1710 -0.8291 -0.6751 24 1 3.5356 -2.3678 -1.3413 25 1 3.7989 -2.3874 2.6036 26 1 4.6913 -3.0107 1.1953 27 1 4.7383 -1.2736 1.5812 28 1 2.6865 -0.0958 1.8332 29 1 1.6566 1.0163 2.8204 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260900690.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:02 Heat of formation + Delta-G solvation = -35.712761 kcal Electronic energy + Delta-G solvation = -10186.453720 eV Core-core repulsion = 8494.056851 eV Total energy + Delta-G solvation = -1692.396868 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.94115 -32.73062 -31.40052 -28.49958 -25.95430 -23.50182 -22.79118 -19.42312 -18.53840 -16.24440 -14.67705 -13.97220 -13.66782 -13.14084 -12.66088 -12.31936 -11.86075 -11.67726 -11.16323 -10.72260 -10.69210 -10.34486 -10.04025 -9.88114 -9.80157 -9.58218 -9.31730 -8.96589 -8.34257 -8.16652 -6.26300 -3.90039 3.47078 3.48492 3.66938 4.59281 5.38615 5.56544 5.63492 5.74398 6.08939 6.23243 6.36374 6.39175 6.44070 6.47227 6.62831 6.68603 6.81393 6.82895 6.98940 7.08620 7.21431 7.41172 7.52384 7.66725 7.70768 8.40914 8.54492 9.00085 9.77076 11.13278 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.052157 B = 0.018606 C = 0.015833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.710063 B = 1504.566057 C = 1768.006817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.093 4.093 3 H 0.039 0.961 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.088 4.088 7 H 0.062 0.938 8 C -0.132 4.132 9 C 0.032 3.968 10 C -0.575 4.575 11 H 0.046 0.954 12 C 0.018 3.982 13 N -0.915 5.915 14 Si 1.060 2.940 15 H -0.284 1.284 16 H -0.289 1.289 17 H -0.289 1.289 18 H 0.061 0.939 19 H 0.010 0.990 20 H 0.048 0.952 21 H 0.043 0.957 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.042 0.958 28 H 0.036 0.964 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 -3.165 -5.202 6.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.112 4.112 3 H 0.058 0.942 4 C -0.154 4.154 5 C -0.160 4.160 6 C -0.106 4.106 7 H 0.080 0.920 8 C -0.190 4.190 9 C 0.014 3.986 10 C -0.613 4.613 11 H 0.064 0.936 12 C -0.185 4.185 13 N -0.552 5.552 14 Si 0.889 3.111 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.216 1.216 18 H 0.081 0.919 19 H 0.029 0.971 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.156 -2.858 -3.801 4.894 hybrid contribution 0.876 -0.320 -1.451 1.725 sum 2.032 -3.178 -5.252 6.466 Atomic orbital electron populations 1.21537 0.95460 1.00513 0.98783 1.21959 0.96094 0.97409 0.95764 0.94228 1.22406 0.97012 0.98444 0.97586 1.22565 0.97311 0.98565 0.97554 1.22056 0.95759 1.00322 0.92495 0.91973 1.21684 0.97432 0.99431 1.00415 1.19613 0.94841 0.91864 0.92323 1.21835 1.16964 1.09988 1.12519 0.93617 1.25689 1.00428 0.94922 0.97502 1.70802 1.27973 1.15267 1.41148 0.83675 0.75690 0.75415 0.76350 1.20965 1.21577 1.21617 0.91947 0.97088 0.93298 0.93801 0.92585 0.92739 0.93460 0.92631 0.94662 0.93910 0.94609 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.40 7.90 37.16 0.29 -2.11 15 2 C -0.09 -2.10 3.50 -89.51 -0.31 -2.42 15 3 H 0.04 0.90 8.14 -51.93 -0.42 0.48 15 4 C -0.12 -2.24 6.36 -25.07 -0.16 -2.40 15 5 C -0.12 -2.27 6.33 -24.74 -0.16 -2.42 15 6 C -0.09 -1.87 2.98 -88.96 -0.27 -2.14 15 7 H 0.06 1.38 7.77 -51.93 -0.40 0.98 15 8 C -0.13 -2.58 9.12 37.16 0.34 -2.24 15 9 C 0.03 0.80 2.27 -90.65 -0.21 0.60 15 10 C -0.57 -15.63 5.77 -34.44 -0.20 -15.83 15 11 H 0.05 1.26 7.65 -52.49 -0.40 0.86 15 12 C 0.02 0.51 4.79 -17.82 -0.09 0.43 15 13 N -0.92 -27.35 13.60 55.43 0.75 -26.59 15 14 Si 1.06 25.20 29.91 -169.99 -5.08 20.12 15 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 18 H 0.06 1.58 6.97 -51.93 -0.36 1.22 15 19 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 15 20 H 0.05 1.12 7.46 -51.93 -0.39 0.73 15 21 H 0.04 0.76 8.14 -51.93 -0.42 0.33 15 22 H 0.06 1.05 7.83 -51.93 -0.41 0.65 15 23 H 0.05 0.97 8.04 -51.93 -0.42 0.55 15 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.05 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 15 27 H 0.04 0.80 8.12 -51.93 -0.42 0.38 15 28 H 0.04 0.97 6.23 -51.93 -0.32 0.64 15 29 H 0.27 8.06 6.64 -40.82 -0.27 7.78 15 LS Contribution 229.41 15.07 3.46 3.46 Total: -1.00 -28.42 229.41 -6.35 -34.78 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -4.73 Total: -3.23 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: -0.75 Total: -28.54 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.75 Total: -26.59 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.42 -6.35 -34.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900690.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.936 kcal (2) G-P(sol) polarization free energy of solvation -28.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds