Wall clock time and date at job start Mon Mar 30 2020 02:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.05652 * 2 1 4 4 C 1.54259 * 110.03190 * 238.58345 * 2 1 3 5 5 C 1.54893 * 104.19778 * 217.10442 * 4 2 1 6 6 C 1.54888 * 102.74582 * 37.94363 * 5 4 2 7 7 H 1.08999 * 110.60184 * 80.79409 * 6 5 4 8 8 C 1.52999 * 110.48414 * 203.38206 * 6 5 4 9 9 C 1.53874 * 110.03192 * 121.41620 * 2 1 3 10 10 C 1.50702 * 110.03348 * 0.02562 * 9 2 1 11 11 H 1.07998 * 119.99974 * 81.90388 * 10 9 2 12 12 C 1.37881 * 119.99575 * 261.90625 * 10 9 2 13 13 N 1.31513 * 120.00298 * 7.47115 * 12 10 9 14 14 Si 1.86804 * 119.99702 * 187.47775 * 12 10 9 15 15 H 1.48499 * 109.47074 * 179.97438 * 14 12 10 16 16 H 1.48503 * 109.46822 * 299.99530 * 14 12 10 17 17 H 1.48496 * 109.47464 * 59.99525 * 14 12 10 18 18 H 1.09004 * 109.47390 * 298.01495 * 1 2 3 19 19 H 1.08996 * 109.47420 * 58.01688 * 1 2 3 20 20 H 1.09000 * 109.47344 * 178.02328 * 1 2 3 21 21 H 1.08996 * 110.48833 * 98.42836 * 4 2 1 22 22 H 1.09000 * 110.49137 * 335.78242 * 4 2 1 23 23 H 1.08999 * 110.75790 * 279.63093 * 5 4 2 24 24 H 1.09003 * 110.91670 * 156.32931 * 5 4 2 25 25 H 1.09000 * 109.47155 * 174.77830 * 8 6 5 26 26 H 1.09006 * 109.46994 * 294.77025 * 8 6 5 27 27 H 1.08998 * 109.47553 * 54.77321 * 8 6 5 28 28 H 1.09002 * 110.07195 * 238.59137 * 9 2 1 29 29 H 0.96998 * 120.00128 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2368 5 6 3.3137 -1.5007 -0.7191 6 6 2.8874 -1.9407 0.7035 7 1 2.2778 -2.8431 0.6593 8 6 4.1174 -2.1695 1.5842 9 6 2.0571 -0.7535 1.2337 10 6 0.9037 -1.2597 2.0612 11 1 0.4061 -2.1787 1.7889 12 6 0.4839 -0.5494 3.1659 13 7 0.9887 0.6393 3.4142 14 14 -0.8018 -1.2758 4.3100 15 1 -1.0780 -0.3215 5.4137 16 1 -2.0524 -1.5307 3.5508 17 1 -0.2968 -2.5528 4.8751 18 1 -0.3634 0.4827 0.9073 19 1 -0.3634 0.5443 -0.8716 20 1 -0.3634 -1.0270 -0.0354 21 1 2.3297 -0.0536 -2.0254 22 1 1.3142 -1.4660 -1.5966 23 1 4.1710 -0.8291 -0.6751 24 1 3.5356 -2.3678 -1.3413 25 1 3.7989 -2.3874 2.6036 26 1 4.6913 -3.0107 1.1953 27 1 4.7383 -1.2736 1.5812 28 1 2.6865 -0.0958 1.8332 29 1 1.6566 1.0163 2.8204 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260900690.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:02 Heat of formation + Delta-G solvation = -51.188260 kcal Electronic energy + Delta-G solvation = -10187.124787 eV Core-core repulsion = 8494.056851 eV Total energy + Delta-G solvation = -1693.067936 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.69637 -34.76930 -33.13063 -30.24048 -27.83835 -25.50245 -24.48117 -21.06122 -20.44708 -18.25336 -16.43417 -15.75618 -15.51624 -14.98662 -14.39738 -14.00962 -13.55928 -13.41528 -13.09247 -12.54455 -12.42059 -12.14420 -11.93181 -11.50242 -11.40068 -11.25343 -11.16154 -10.82492 -10.42277 -10.25613 -8.49785 -6.12246 1.52800 1.59709 1.77963 2.61375 3.29088 3.93220 4.04047 4.09800 4.44586 4.61553 4.74919 4.78872 4.80483 4.92002 4.93291 5.07404 5.09029 5.18540 5.25154 5.44921 5.48116 5.60869 5.69178 5.74856 5.85504 6.28948 6.34456 6.81304 7.61481 8.90390 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.052157 B = 0.018606 C = 0.015833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.710063 B = 1504.566057 C = 1768.006817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.098 4.098 3 H 0.029 0.971 4 C -0.110 4.110 5 C -0.113 4.113 6 C -0.090 4.090 7 H 0.052 0.948 8 C -0.128 4.128 9 C 0.022 3.978 10 C -0.572 4.572 11 H 0.039 0.961 12 C -0.032 4.032 13 N -0.944 5.944 14 Si 1.100 2.900 15 H -0.289 1.289 16 H -0.273 1.273 17 H -0.274 1.274 18 H 0.026 0.974 19 H 0.039 0.961 20 H 0.043 0.957 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.002 0.998 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.291 -4.296 -6.642 8.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 H 0.048 0.952 4 C -0.147 4.147 5 C -0.150 4.150 6 C -0.109 4.109 7 H 0.070 0.930 8 C -0.185 4.185 9 C 0.003 3.997 10 C -0.610 4.610 11 H 0.057 0.943 12 C -0.229 4.229 13 N -0.583 5.583 14 Si 0.924 3.076 15 H -0.215 1.215 16 H -0.198 1.198 17 H -0.200 1.200 18 H 0.045 0.955 19 H 0.058 0.942 20 H 0.062 0.938 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.021 0.979 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.419 -4.005 -5.262 6.763 hybrid contribution 0.810 0.030 -1.032 1.312 sum 2.229 -3.974 -6.294 7.771 Atomic orbital electron populations 1.21415 0.95721 1.00081 0.98296 1.21923 0.95930 0.97167 0.96707 0.95195 1.22353 0.97314 0.98696 0.96337 1.22519 0.97179 0.99746 0.95546 1.22003 0.95823 0.98222 0.94838 0.92964 1.21632 0.97086 1.00872 0.98925 1.19678 0.94231 0.93030 0.92793 1.22086 1.17164 1.09136 1.12622 0.94313 1.26910 1.01915 0.94710 0.99354 1.70919 1.29164 1.16643 1.41592 0.83144 0.74418 0.75202 0.74866 1.21471 1.19848 1.20002 0.95523 0.94206 0.93825 0.91220 0.91929 0.91826 0.90458 0.94949 0.91352 0.93705 0.97927 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.39 7.90 71.98 0.57 -3.82 15 2 C -0.10 -4.35 3.50 -10.07 -0.04 -4.39 15 3 H 0.03 1.35 8.14 -2.39 -0.02 1.33 15 4 C -0.11 -3.85 6.36 31.67 0.20 -3.65 15 5 C -0.11 -3.77 6.33 31.89 0.20 -3.57 15 6 C -0.09 -3.71 2.98 -9.72 -0.03 -3.74 15 7 H 0.05 2.24 7.77 -2.39 -0.02 2.22 15 8 C -0.13 -4.80 9.12 71.98 0.66 -4.14 15 9 C 0.02 1.07 2.27 -10.81 -0.02 1.05 15 10 C -0.57 -31.44 5.77 25.60 0.15 -31.29 15 11 H 0.04 2.14 7.65 -2.91 -0.02 2.12 15 12 C -0.03 -1.80 4.79 84.66 0.41 -1.39 15 13 N -0.94 -58.13 13.60 21.45 0.29 -57.83 15 14 Si 1.10 51.03 29.91 68.60 2.05 53.08 15 15 H -0.29 -13.56 7.11 99.48 0.71 -12.86 15 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 18 H 0.03 1.34 6.97 -2.39 -0.02 1.33 15 19 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.04 1.95 7.46 -2.39 -0.02 1.93 15 21 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.06 2.12 7.83 -2.39 -0.02 2.11 15 23 H 0.06 2.03 8.04 -2.39 -0.02 2.01 15 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 26 H 0.07 2.09 8.14 -2.38 -0.02 2.07 15 27 H 0.04 1.63 8.12 -2.39 -0.02 1.61 15 28 H 0.00 0.14 6.23 -2.39 -0.01 0.12 15 29 H 0.26 15.98 6.64 -92.71 -0.62 15.36 15 Total: -1.00 -61.36 229.41 5.68 -55.68 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.24 Total: 4.02 kcal Atomic # 6 Polarization: -57.04 SS G_CDS: 2.09 Total: -54.95 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.29 Total: -57.83 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -61.36 5.68 -55.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900690.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.495 kcal (2) G-P(sol) polarization free energy of solvation -61.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds