Wall clock time and date at job start Mon Mar 30 2020 02:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27640 * 125.76740 * 2 1 4 4 O 1.41473 * 113.17954 * 179.69394 * 3 2 1 5 5 C 1.44253 * 107.45687 * 17.37662 * 4 3 2 6 6 H 1.09005 * 111.01153 * 216.79998 * 5 4 3 7 7 C 1.52997 * 111.01175 * 92.97046 * 5 4 3 8 8 C 1.50701 * 109.47212 * 69.59869 * 7 5 4 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 5 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 C 1.51683 * 125.76623 * 180.02562 * 2 1 3 17 17 H 1.09005 * 109.47250 * 269.97568 * 1 2 3 18 18 H 1.09000 * 109.47005 * 29.97548 * 1 2 3 19 19 H 1.09005 * 109.47107 * 149.97700 * 1 2 3 20 20 H 1.09002 * 109.47153 * 309.59871 * 7 5 4 21 21 H 1.09001 * 109.46832 * 189.60062 * 7 5 4 22 22 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 23 23 H 1.08997 * 110.80433 * 46.45499 * 16 2 1 24 24 H 1.08996 * 110.97746 * 283.02190 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6338 0.7274 0.0069 5 6 3.7717 -0.6499 -0.3991 6 1 4.5759 -1.1405 0.1493 7 6 3.9963 -0.7569 -1.9087 8 6 5.3632 -0.2232 -2.2523 9 1 6.0074 0.1542 -1.4719 10 6 5.7917 -0.2176 -3.5628 11 7 5.0074 -0.6776 -4.5130 12 14 7.4862 0.4433 -3.9885 13 1 8.5202 -0.3499 -3.2764 14 1 7.7042 0.3395 -5.4537 15 1 7.5811 1.8661 -3.5739 16 6 2.3936 -1.2308 -0.0006 17 1 -0.3634 -0.0004 1.0277 18 1 -0.3633 0.8902 -0.5135 19 1 -0.3633 -0.8898 -0.5142 20 1 3.2371 -0.1749 -2.4312 21 1 3.9269 -1.8012 -2.2132 22 1 5.3088 -0.6733 -5.4350 23 1 2.0503 -1.9548 -0.7394 24 1 2.4356 -1.6819 0.9908 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260920230.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:05 Heat of formation + Delta-G solvation = -19.313496 kcal Electronic energy + Delta-G solvation = -9560.474699 eV Core-core repulsion = 7667.529951 eV Total energy + Delta-G solvation = -1892.944748 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.97799 -35.53256 -34.55196 -32.71215 -29.24213 -29.13670 -25.41049 -22.37651 -20.46730 -18.59151 -17.34994 -16.82032 -16.07939 -15.77327 -14.71208 -14.40177 -13.82786 -13.65283 -13.45683 -13.24734 -12.94288 -12.62182 -12.41989 -12.26554 -11.77358 -11.41948 -11.30002 -10.63757 -10.13498 -8.26062 -6.35967 1.03946 1.35612 1.39863 1.47630 2.31813 2.39194 3.07169 3.33140 3.74857 3.83360 4.12451 4.55016 4.68297 4.74350 4.81368 4.82952 4.97262 5.28067 5.38100 5.51124 5.69400 6.14235 6.62859 6.76773 7.31927 8.85701 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.086352 B = 0.012036 C = 0.011540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.176310 B = 2325.777352 C = 2425.681049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.087 3.913 3 N -0.347 5.347 4 O -0.233 6.233 5 C 0.043 3.957 6 H 0.108 0.892 7 C 0.019 3.981 8 C -0.539 4.539 9 H 0.052 0.948 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.965 3.035 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.275 1.275 16 C -0.144 4.144 17 H 0.115 0.885 18 H 0.079 0.921 19 H 0.109 0.891 20 H -0.014 1.014 21 H 0.020 0.980 22 H 0.265 0.735 23 H 0.112 0.888 24 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 -2.866 7.972 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 N -0.093 5.093 4 O -0.250 6.250 5 C -0.015 4.015 6 H 0.126 0.874 7 C -0.018 4.018 8 C -0.577 4.577 9 H 0.071 0.929 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.790 3.210 13 H -0.187 1.187 14 H -0.202 1.202 15 H -0.200 1.200 16 C -0.183 4.183 17 H 0.133 0.867 18 H 0.097 0.903 19 H 0.128 0.872 20 H 0.004 0.996 21 H 0.038 0.962 22 H 0.074 0.926 23 H 0.130 0.870 24 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.399 -1.698 7.843 10.915 hybrid contribution 1.099 -0.509 -0.674 1.386 sum -6.301 -2.207 7.169 9.796 Atomic orbital electron populations 1.20627 0.82022 1.05370 1.05743 1.27080 0.99862 0.92040 0.91585 1.77685 0.89744 1.25799 1.16045 1.91180 1.16228 1.30128 1.87441 1.23931 0.98273 0.82011 0.97260 0.87423 1.19334 0.95840 0.96116 0.90536 1.21465 1.01598 1.41309 0.93339 0.92933 1.25932 1.01948 0.95483 0.96253 1.70058 1.38558 1.47607 1.00885 0.85498 0.79332 0.78926 0.77290 1.18661 1.20220 1.20044 1.23260 0.90947 0.98403 1.05690 0.86682 0.90258 0.87245 0.99592 0.96166 0.92589 0.87007 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.49 71.24 0.75 -0.80 14 2 C 0.09 2.80 7.45 46.90 0.35 3.15 14 3 N -0.35 -14.78 12.45 -40.62 -0.51 -15.29 14 4 O -0.23 -11.52 12.15 -38.50 -0.47 -11.99 14 5 C 0.04 1.91 3.72 31.20 0.12 2.03 14 6 H 0.11 4.45 8.14 -2.38 -0.02 4.43 14 7 C 0.02 1.03 4.69 29.85 0.14 1.17 14 8 C -0.54 -32.47 9.02 25.60 0.23 -32.24 14 9 H 0.05 3.13 7.74 -2.91 -0.02 3.11 14 10 C 0.00 0.10 5.46 84.66 0.46 0.57 14 11 N -0.93 -57.77 13.29 21.45 0.28 -57.48 14 12 Si 0.97 46.25 29.54 68.60 2.03 48.28 14 13 H -0.26 -11.87 7.11 99.48 0.71 -11.17 14 14 H -0.28 -12.72 7.11 99.48 0.71 -12.02 14 15 H -0.28 -13.07 7.11 99.48 0.71 -12.37 14 16 C -0.14 -4.52 6.62 30.77 0.20 -4.31 14 17 H 0.11 1.54 8.14 -2.38 -0.02 1.52 14 18 H 0.08 1.58 8.14 -2.39 -0.02 1.56 14 19 H 0.11 1.56 8.14 -2.38 -0.02 1.54 14 20 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 14 21 H 0.02 1.11 8.14 -2.39 -0.02 1.09 14 22 H 0.27 15.42 8.31 -92.71 -0.77 14.65 14 23 H 0.11 3.19 7.91 -2.39 -0.02 3.18 14 24 H 0.13 3.03 8.14 -2.39 -0.02 3.01 14 Total: -1.00 -74.01 217.16 4.76 -69.25 By element: Atomic # 1 Polarization: -3.51 SS G_CDS: 1.17 Total: -2.34 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 2.25 Total: -30.43 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -0.22 Total: -72.77 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.47 Total: -11.99 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -74.01 4.76 -69.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260920230.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.938 kcal (2) G-P(sol) polarization free energy of solvation -74.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds