Wall clock time and date at job start Mon Mar 30 2020 02:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46685 * 2 1 4 4 C 1.52999 * 109.47601 * 120.00067 * 2 1 3 5 5 C 1.52996 * 115.54731 * 300.79293 * 4 2 1 6 6 C 1.52998 * 117.50009 * 155.11864 * 4 2 1 7 7 C 1.52995 * 117.49571 * 86.45901 * 4 2 1 8 8 H 1.09005 * 117.49316 * 215.00336 * 7 4 2 9 9 C 1.50697 * 117.50403 * 359.97438 * 7 4 2 10 10 H 1.07999 * 119.99569 * 354.82403 * 9 7 4 11 11 C 1.37878 * 120.00137 * 174.81196 * 9 7 4 12 12 N 1.31510 * 119.99851 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99818 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46938 * 90.00600 * 13 11 9 15 15 H 1.48494 * 109.47114 * 210.00339 * 13 11 9 16 16 H 1.48501 * 109.47028 * 330.00485 * 13 11 9 17 17 H 1.08998 * 109.47007 * 299.99446 * 1 2 3 18 18 H 1.08994 * 109.47418 * 60.00006 * 1 2 3 19 19 H 1.09004 * 109.47053 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47007 * 240.00554 * 2 1 3 21 21 H 1.08996 * 109.47097 * 173.57592 * 3 2 1 22 22 H 1.09005 * 109.47271 * 293.57350 * 3 2 1 23 23 H 1.09001 * 109.47455 * 53.57530 * 3 2 1 24 24 H 1.09004 * 109.47384 * 85.57942 * 5 4 2 25 25 H 1.09004 * 109.47521 * 325.58057 * 5 4 2 26 26 H 1.09006 * 109.47228 * 205.58366 * 5 4 2 27 27 H 1.08999 * 117.49835 * 359.97438 * 6 4 2 28 28 H 1.09003 * 117.49593 * 145.00010 * 6 4 2 29 29 H 0.97007 * 119.99911 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5939 -0.1232 2.5848 6 6 3.4363 -1.3435 1.1850 7 6 2.1966 -2.2412 1.1728 8 1 1.9817 -2.8152 2.0743 9 6 1.8360 -2.9136 -0.1268 10 1 1.4039 -2.3369 -0.9312 11 6 2.0578 -4.2647 -0.2888 12 7 2.5837 -4.9668 0.6910 13 14 1.6114 -5.0979 -1.9000 14 1 2.7749 -5.0490 -2.8215 15 1 1.2448 -6.5132 -1.6404 16 1 0.4598 -4.3937 -2.5190 17 1 -0.3633 0.5137 0.8900 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 1.8933 -0.5137 -0.8900 21 1 3.1238 1.4448 0.1150 22 1 1.7735 1.9221 -0.9419 23 1 1.5857 1.9885 0.8269 24 1 0.6177 -0.5259 2.8553 25 1 1.5268 0.9610 2.4933 26 1 2.3191 -0.3783 3.3576 27 1 3.9914 -1.2394 0.2527 28 1 4.0370 -1.3268 2.0944 29 1 2.7395 -5.9175 0.5771 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260973952.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:44 Heat of formation + Delta-G solvation = -19.040592 kcal Electronic energy + Delta-G solvation = -9929.406875 eV Core-core repulsion = 8237.732966 eV Total energy + Delta-G solvation = -1691.673909 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.56138 -34.84054 -33.56573 -29.45398 -27.95305 -26.97652 -23.23619 -22.26015 -19.26011 -18.00296 -16.73008 -15.78600 -15.51934 -14.47129 -14.32124 -13.92313 -13.62608 -13.07013 -12.93711 -12.76282 -12.69381 -12.62927 -12.19736 -11.87231 -11.76574 -11.47159 -11.08305 -10.76465 -10.18029 -9.83764 -8.15636 -6.19346 1.40372 1.40573 1.51773 2.41512 3.04544 3.53071 4.06793 4.20241 4.45223 4.58250 4.70117 4.78488 4.82816 4.94120 5.07978 5.10053 5.11537 5.17018 5.18352 5.32405 5.36533 5.54309 5.64797 5.70602 5.81069 5.92644 6.42913 6.87906 7.43245 8.96491 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.055236 B = 0.015687 C = 0.013771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.793991 B = 1784.445668 C = 2032.746821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 C -0.134 4.134 4 C -0.127 4.127 5 C -0.103 4.103 6 C -0.202 4.202 7 C 0.000 4.000 8 H 0.034 0.966 9 C -0.497 4.497 10 H 0.066 0.934 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.958 3.042 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.263 1.263 17 H 0.062 0.938 18 H 0.060 0.940 19 H 0.035 0.965 20 H 0.047 0.953 21 H 0.045 0.955 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 9.473 -1.056 9.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.072 4.072 3 C -0.191 4.191 4 C -0.128 4.128 5 C -0.160 4.160 6 C -0.240 4.240 7 C -0.018 4.018 8 H 0.053 0.947 9 C -0.535 4.535 10 H 0.084 0.916 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.783 3.217 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.187 1.187 17 H 0.081 0.919 18 H 0.079 0.921 19 H 0.054 0.946 20 H 0.066 0.934 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.709 9.296 -1.009 9.735 hybrid contribution 0.211 -1.038 -0.537 1.188 sum -2.498 8.258 -1.546 8.765 Atomic orbital electron populations 1.21684 0.94866 1.00907 1.01604 1.20494 0.95865 0.95488 0.95371 1.21762 1.00551 0.94909 1.01924 1.21630 0.98354 0.96307 0.96473 1.21260 1.00151 1.00756 0.93813 1.23084 0.91282 1.10059 0.99566 1.19818 0.97336 0.88263 0.96401 0.94736 1.21057 1.39814 0.93398 0.99187 0.91589 1.25901 0.95056 0.98307 0.99941 1.70116 1.45308 1.07704 1.33807 0.85553 0.78840 0.77639 0.79673 1.20112 1.20891 1.18689 0.91940 0.92060 0.94565 0.93411 0.93557 0.92034 0.91614 0.93133 0.90611 0.93610 0.91777 0.91347 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 8.98 71.98 0.65 -3.81 15 2 C -0.05 -1.98 2.08 -10.79 -0.02 -2.00 15 3 C -0.13 -3.87 8.86 71.98 0.64 -3.24 15 4 C -0.13 -5.29 1.63 -52.19 -0.08 -5.38 15 5 C -0.10 -3.53 8.92 71.98 0.64 -2.89 15 6 C -0.20 -9.46 9.60 30.62 0.29 -9.17 15 7 C 0.00 0.02 5.24 -11.52 -0.06 -0.04 15 8 H 0.03 2.03 8.02 -2.38 -0.02 2.01 15 9 C -0.50 -28.01 8.56 25.60 0.22 -27.79 15 10 H 0.07 3.60 6.07 -2.91 -0.02 3.58 15 11 C 0.01 0.34 5.46 84.66 0.46 0.80 15 12 N -0.93 -56.70 13.20 21.45 0.28 -56.42 15 13 Si 0.96 44.50 29.54 68.60 2.03 46.52 15 14 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 15 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 16 H -0.26 -11.64 7.11 99.48 0.71 -10.94 15 17 H 0.06 1.83 7.54 -2.39 -0.02 1.82 15 18 H 0.06 1.75 8.14 -2.39 -0.02 1.73 15 19 H 0.04 1.39 8.10 -2.38 -0.02 1.37 15 20 H 0.05 2.02 6.45 -2.39 -0.02 2.01 15 21 H 0.05 1.36 8.14 -2.39 -0.02 1.34 15 22 H 0.06 1.55 8.14 -2.38 -0.02 1.53 15 23 H 0.06 1.66 6.82 -2.39 -0.02 1.64 15 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.08 2.14 6.45 -2.38 -0.02 2.13 15 26 H 0.04 1.55 7.90 -2.38 -0.02 1.53 15 27 H 0.06 3.07 8.14 -2.39 -0.02 3.05 15 28 H 0.07 3.03 8.05 -2.39 -0.02 3.01 15 29 H 0.26 15.01 8.31 -92.70 -0.77 14.24 15 Total: -1.00 -61.78 237.81 6.14 -55.64 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.09 Total: 7.76 kcal Atomic # 6 Polarization: -56.24 SS G_CDS: 2.73 Total: -53.51 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.28 Total: -56.42 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -61.78 6.14 -55.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973952.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.599 kcal (2) G-P(sol) polarization free energy of solvation -61.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds