Wall clock time and date at job start Mon Mar 30 2020 02:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46919 * 2 1 4 4 H 1.09000 * 115.56581 * 29.31643 * 3 2 1 5 5 C 1.52997 * 117.50077 * 243.62249 * 3 2 1 6 6 C 1.52998 * 60.00271 * 252.51378 * 5 3 2 7 7 H 1.08999 * 117.50530 * 107.51154 * 6 5 3 8 8 C 1.53003 * 117.49956 * 252.51168 * 6 5 3 9 9 H 1.09003 * 109.47178 * 8.60847 * 8 6 5 10 10 C 1.53003 * 109.47093 * 248.60666 * 8 6 5 11 11 C 1.50704 * 109.47029 * 128.60637 * 8 6 5 12 12 H 1.07996 * 119.99862 * 5.63458 * 11 8 6 13 13 C 1.37882 * 119.99606 * 185.63926 * 11 8 6 14 14 N 1.31512 * 119.99548 * 197.52338 * 13 11 8 15 15 Si 1.86793 * 120.00139 * 17.52767 * 13 11 8 16 16 H 1.48501 * 109.47082 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47262 * 299.99937 * 15 13 11 18 18 H 1.48497 * 109.47486 * 59.99985 * 15 13 11 19 19 H 1.08996 * 109.47347 * 59.99724 * 1 2 3 20 20 H 1.09002 * 109.47056 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47159 * 299.99589 * 1 2 3 22 22 H 1.09007 * 109.46824 * 240.00101 * 2 1 3 23 23 H 1.08996 * 109.47116 * 120.00776 * 2 1 3 24 24 H 1.08997 * 117.50299 * 145.02437 * 5 3 2 25 25 H 1.09000 * 117.49811 * 0.02562 * 5 3 2 26 26 H 1.09001 * 109.46632 * 186.28094 * 10 8 6 27 27 H 1.09003 * 109.46856 * 306.27966 * 10 8 6 28 28 H 1.08998 * 109.47315 * 66.28032 * 10 8 6 29 29 H 0.97001 * 120.00378 * 354.88060 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8439 1.9076 -1.2158 6 6 3.5501 1.6578 0.1183 7 1 4.1806 0.7721 0.1960 8 6 4.0300 2.8803 0.9033 9 1 3.6458 3.7866 0.4351 10 6 5.5596 2.9166 0.9057 11 6 3.5273 2.7957 2.3215 12 1 3.0038 1.9127 2.6570 13 6 3.7357 3.8457 3.1905 14 7 3.6198 3.6589 4.4871 15 14 4.1826 5.5333 2.5262 16 1 4.3525 6.4812 3.6567 17 1 5.4520 5.4438 1.7608 18 1 3.0991 6.0166 1.6331 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 2.7212 2.9427 -1.5343 25 1 3.0091 1.1860 -2.0159 26 1 5.9029 3.7213 1.5559 27 1 5.9450 1.9647 1.2710 28 1 5.9206 3.0897 -0.1082 29 1 3.3157 2.8034 4.8287 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260979093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:57 Heat of formation + Delta-G solvation = -4.462411 kcal Electronic energy + Delta-G solvation = -9734.983773 eV Core-core repulsion = 8043.942022 eV Total energy + Delta-G solvation = -1691.041751 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.67961 -33.66048 -31.75562 -30.09006 -24.62627 -23.49370 -22.07973 -19.78743 -18.84635 -17.29538 -14.54500 -14.37081 -13.91624 -13.41335 -13.00058 -12.21836 -12.03474 -11.74093 -11.64520 -11.14144 -10.78409 -10.53927 -10.40356 -10.30556 -9.80194 -9.56693 -9.16210 -8.99543 -8.57823 -8.05964 -6.34174 -3.94066 3.44284 3.47537 3.66118 4.56559 4.59174 5.20849 5.36030 5.50600 5.58061 5.75113 5.85317 5.98370 6.20413 6.24708 6.32376 6.47529 6.50463 6.54075 6.58313 6.68640 6.96773 6.99795 7.15081 7.31940 7.65027 8.28423 8.48951 9.03346 9.73151 11.04464 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.051447 B = 0.014857 C = 0.013213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.113637 B = 1884.188104 C = 2118.553446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.145 4.145 4 H 0.104 0.896 5 C -0.198 4.198 6 C -0.107 4.107 7 H 0.085 0.915 8 C 0.039 3.961 9 H 0.019 0.981 10 C -0.144 4.144 11 C -0.587 4.587 12 H 0.056 0.944 13 C 0.026 3.974 14 N -0.913 5.913 15 Si 1.047 2.953 16 H -0.288 1.288 17 H -0.275 1.275 18 H -0.286 1.286 19 H 0.051 0.949 20 H 0.046 0.954 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.021 0.979 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 -3.328 -9.209 9.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.164 4.164 4 H 0.122 0.878 5 C -0.235 4.235 6 C -0.126 4.126 7 H 0.103 0.897 8 C 0.020 3.980 9 H 0.037 0.963 10 C -0.202 4.202 11 C -0.625 4.625 12 H 0.074 0.926 13 C -0.178 4.178 14 N -0.548 5.548 15 Si 0.876 3.124 16 H -0.214 1.214 17 H -0.201 1.201 18 H -0.212 1.212 19 H 0.070 0.930 20 H 0.065 0.935 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.590 -1.792 -8.736 9.059 hybrid contribution -0.462 -1.620 -0.456 1.745 sum -2.051 -3.412 -9.193 10.018 Atomic orbital electron populations 1.21732 0.96204 1.00633 1.01780 1.21064 0.95326 0.95341 1.00999 1.22273 0.95818 0.96738 1.01530 0.87809 1.23180 1.07505 1.01031 0.91788 1.22400 0.93357 1.00681 0.96122 0.89671 1.18670 0.91883 0.91464 0.95938 0.96349 1.22183 0.99016 1.00999 0.97958 1.21971 1.40619 1.04520 0.95343 0.92581 1.25751 0.94716 1.03187 0.94171 1.70857 1.42995 1.28268 1.12681 0.84015 0.77073 0.75942 0.75379 1.21415 1.20132 1.21232 0.93034 0.93480 0.92608 0.92850 0.92085 0.89762 0.90372 0.93001 0.94047 0.96026 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.87 37.16 0.37 -1.70 15 2 C -0.09 -1.46 6.22 -26.73 -0.17 -1.63 15 3 C -0.15 -2.81 5.05 -90.62 -0.46 -3.27 15 4 H 0.10 2.21 8.07 -51.93 -0.42 1.79 15 5 C -0.20 -3.55 9.82 -26.73 -0.26 -3.81 15 6 C -0.11 -2.26 4.82 -90.62 -0.44 -2.69 15 7 H 0.09 1.75 8.11 -51.93 -0.42 1.33 15 8 C 0.04 0.96 2.04 -91.77 -0.19 0.77 15 9 H 0.02 0.45 6.55 -51.93 -0.34 0.11 15 10 C -0.14 -3.27 8.85 37.16 0.33 -2.94 15 11 C -0.59 -16.66 8.48 -34.44 -0.29 -16.96 15 12 H 0.06 1.72 7.97 -52.49 -0.42 1.30 15 13 C 0.03 0.75 5.29 -17.82 -0.09 0.66 15 14 N -0.91 -28.55 13.70 55.43 0.76 -27.79 15 15 Si 1.05 25.83 26.29 -169.99 -4.47 21.36 15 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 17 H -0.27 -6.29 5.76 56.52 0.33 -5.97 15 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 22 H 0.05 0.79 7.88 -51.93 -0.41 0.38 15 23 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.08 1.49 8.05 -51.93 -0.42 1.07 15 25 H 0.08 1.23 8.03 -51.93 -0.42 0.81 15 26 H 0.05 1.22 4.88 -51.93 -0.25 0.97 15 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 29 H 0.27 8.28 8.73 -40.82 -0.36 7.93 15 LS Contribution 237.52 15.07 3.58 3.58 Total: -1.00 -29.69 237.52 -6.19 -35.88 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.86 Total: -1.45 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: -1.20 Total: -31.58 kcal Atomic # 7 Polarization: -28.55 SS G_CDS: 0.76 Total: -27.79 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -4.47 Total: 21.36 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.69 -6.19 -35.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260979093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.418 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds