Wall clock time and date at job start Mon Mar 30 2020 02:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46919 * 2 1 4 4 H 1.09000 * 115.56581 * 29.31643 * 3 2 1 5 5 C 1.52997 * 117.50077 * 243.62249 * 3 2 1 6 6 C 1.52998 * 60.00271 * 252.51378 * 5 3 2 7 7 H 1.08999 * 117.50530 * 107.51154 * 6 5 3 8 8 C 1.53003 * 117.49956 * 252.51168 * 6 5 3 9 9 H 1.09003 * 109.47178 * 8.60847 * 8 6 5 10 10 C 1.53003 * 109.47093 * 248.60666 * 8 6 5 11 11 C 1.50704 * 109.47029 * 128.60637 * 8 6 5 12 12 H 1.07996 * 119.99862 * 5.63458 * 11 8 6 13 13 C 1.37882 * 119.99606 * 185.63926 * 11 8 6 14 14 N 1.31512 * 119.99548 * 197.52338 * 13 11 8 15 15 Si 1.86793 * 120.00139 * 17.52767 * 13 11 8 16 16 H 1.48501 * 109.47082 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47262 * 299.99937 * 15 13 11 18 18 H 1.48497 * 109.47486 * 59.99985 * 15 13 11 19 19 H 1.08996 * 109.47347 * 59.99724 * 1 2 3 20 20 H 1.09002 * 109.47056 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47159 * 299.99589 * 1 2 3 22 22 H 1.09007 * 109.46824 * 240.00101 * 2 1 3 23 23 H 1.08996 * 109.47116 * 120.00776 * 2 1 3 24 24 H 1.08997 * 117.50299 * 145.02437 * 5 3 2 25 25 H 1.09000 * 117.49811 * 0.02562 * 5 3 2 26 26 H 1.09001 * 109.46632 * 186.28094 * 10 8 6 27 27 H 1.09003 * 109.46856 * 306.27966 * 10 8 6 28 28 H 1.08998 * 109.47315 * 66.28032 * 10 8 6 29 29 H 0.97001 * 120.00378 * 354.88060 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8439 1.9076 -1.2158 6 6 3.5501 1.6578 0.1183 7 1 4.1806 0.7721 0.1960 8 6 4.0300 2.8803 0.9033 9 1 3.6458 3.7866 0.4351 10 6 5.5596 2.9166 0.9057 11 6 3.5273 2.7957 2.3215 12 1 3.0038 1.9127 2.6570 13 6 3.7357 3.8457 3.1905 14 7 3.6198 3.6589 4.4871 15 14 4.1826 5.5333 2.5262 16 1 4.3525 6.4812 3.6567 17 1 5.4520 5.4438 1.7608 18 1 3.0991 6.0166 1.6331 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 2.7212 2.9427 -1.5343 25 1 3.0091 1.1860 -2.0159 26 1 5.9029 3.7213 1.5559 27 1 5.9450 1.9647 1.2710 28 1 5.9206 3.0897 -0.1082 29 1 3.3157 2.8034 4.8287 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260979093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:57 Heat of formation + Delta-G solvation = -21.804647 kcal Electronic energy + Delta-G solvation = -9735.735789 eV Core-core repulsion = 8043.942022 eV Total energy + Delta-G solvation = -1691.793767 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.26679 -35.58525 -33.51753 -31.77729 -26.71248 -24.82443 -23.83609 -21.23489 -20.68274 -19.48353 -16.25836 -15.86687 -15.52245 -15.14232 -14.76334 -14.11780 -13.66340 -13.28094 -13.08031 -12.87243 -12.34353 -12.14491 -12.09511 -11.85034 -11.65065 -11.38752 -11.08067 -10.77351 -10.33137 -10.18984 -8.66872 -6.28149 1.46038 1.53269 1.72663 2.51451 3.04306 3.14146 3.80428 4.15626 4.16986 4.34335 4.53468 4.59535 4.65777 4.75998 4.86170 4.92263 5.02385 5.09702 5.15066 5.28771 5.29809 5.37590 5.45706 5.56974 5.81918 6.08455 6.18849 6.66072 7.48194 8.69542 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.051447 B = 0.014857 C = 0.013213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.113637 B = 1884.188104 C = 2118.553446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.156 4.156 4 H 0.074 0.926 5 C -0.163 4.163 6 C -0.137 4.137 7 H 0.087 0.913 8 C 0.035 3.965 9 H 0.021 0.979 10 C -0.141 4.141 11 C -0.584 4.584 12 H 0.015 0.985 13 C -0.029 4.029 14 N -0.947 5.947 15 Si 1.085 2.915 16 H -0.292 1.292 17 H -0.242 1.242 18 H -0.268 1.268 19 H 0.063 0.937 20 H 0.069 0.931 21 H 0.038 0.962 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.111 0.889 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 -3.089 -11.944 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.174 4.174 4 H 0.093 0.907 5 C -0.199 4.199 6 C -0.155 4.155 7 H 0.105 0.895 8 C 0.016 3.984 9 H 0.039 0.961 10 C -0.198 4.198 11 C -0.622 4.622 12 H 0.033 0.967 13 C -0.225 4.225 14 N -0.584 5.584 15 Si 0.907 3.093 16 H -0.219 1.219 17 H -0.166 1.166 18 H -0.193 1.193 19 H 0.082 0.918 20 H 0.088 0.912 21 H 0.057 0.943 22 H 0.096 0.904 23 H 0.062 0.938 24 H 0.108 0.892 25 H 0.129 0.871 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.242 -1.580 -11.493 11.667 hybrid contribution -0.619 -1.780 0.409 1.928 sum -1.861 -3.360 -11.084 11.731 Atomic orbital electron populations 1.21702 0.94644 1.02080 1.01565 1.21062 0.96733 0.93325 1.01309 1.22314 0.94360 0.98018 1.02724 0.90741 1.23237 1.03557 1.02207 0.90932 1.22282 0.94540 0.99652 0.99023 0.89484 1.18654 0.93081 0.93195 0.93471 0.96084 1.22084 0.97488 1.00398 0.99833 1.22200 1.39311 1.02656 0.97999 0.96690 1.27218 0.94499 1.07096 0.93724 1.70995 1.45783 1.27436 1.14191 0.83558 0.78943 0.71393 0.75430 1.21893 1.16625 1.19306 0.91786 0.91211 0.94310 0.90444 0.93799 0.89207 0.87115 0.94191 0.94463 0.92477 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.87 71.98 0.71 -3.08 15 2 C -0.09 -2.69 6.22 30.59 0.19 -2.50 15 3 C -0.16 -5.84 5.05 -10.80 -0.05 -5.89 15 4 H 0.07 3.20 8.07 -2.39 -0.02 3.18 15 5 C -0.16 -5.24 9.82 30.59 0.30 -4.94 15 6 C -0.14 -5.53 4.82 -10.79 -0.05 -5.59 15 7 H 0.09 3.45 8.11 -2.39 -0.02 3.44 15 8 C 0.03 1.65 2.04 -11.54 -0.02 1.63 15 9 H 0.02 0.99 6.55 -2.39 -0.02 0.97 15 10 C -0.14 -6.06 8.85 71.98 0.64 -5.42 15 11 C -0.58 -33.88 8.48 25.60 0.22 -33.67 15 12 H 0.01 0.95 7.97 -2.91 -0.02 0.93 15 13 C -0.03 -1.73 5.29 84.66 0.45 -1.28 15 14 N -0.95 -61.17 13.70 21.45 0.29 -60.88 15 15 Si 1.08 51.26 26.29 68.60 1.80 53.06 15 16 H -0.29 -13.99 7.11 99.48 0.71 -13.28 15 17 H -0.24 -10.12 5.76 99.48 0.57 -9.55 15 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 19 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 20 H 0.07 1.53 8.14 -2.39 -0.02 1.51 15 21 H 0.04 1.14 8.14 -2.39 -0.02 1.12 15 22 H 0.08 2.03 7.88 -2.38 -0.02 2.01 15 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 24 H 0.09 2.82 8.05 -2.39 -0.02 2.80 15 25 H 0.11 2.89 8.03 -2.39 -0.02 2.87 15 26 H 0.04 1.78 4.88 -2.39 -0.01 1.77 15 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 15 28 H 0.06 2.04 8.14 -2.39 -0.02 2.03 15 29 H 0.25 16.33 8.73 -92.71 -0.81 15.53 15 Total: -1.00 -65.14 237.52 5.39 -59.76 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.91 Total: 8.80 kcal Atomic # 6 Polarization: -63.11 SS G_CDS: 2.37 Total: -60.74 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.29 Total: -60.88 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 1.80 Total: 53.06 kcal Total: -65.14 5.39 -59.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260979093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.950 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds