Wall clock time and date at job start Mon Mar 30 2020 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99695 * 2 1 4 4 H 1.48503 * 109.47127 * 266.31119 * 3 2 1 5 5 H 1.48495 * 109.47385 * 26.31397 * 3 2 1 6 6 H 1.48508 * 109.47207 * 146.31401 * 3 2 1 7 7 C 1.37875 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99713 * 354.14974 * 7 2 1 9 9 C 1.50695 * 120.00137 * 174.14192 * 7 2 1 10 10 O 1.42897 * 110.54259 * 324.26130 * 9 7 2 11 11 C 1.56304 * 110.82531 * 201.01923 * 9 7 2 12 12 C 1.54890 * 103.22878 * 204.48511 * 11 9 7 13 13 C 1.54265 * 104.19516 * 37.52134 * 12 11 9 14 14 H 1.09000 * 117.76678 * 196.02994 * 13 12 11 15 15 C 1.53007 * 118.19770 * 40.56999 * 13 12 11 16 16 C 1.53000 * 60.37825 * 266.38141 * 15 13 12 17 17 H 1.09001 * 119.30335 * 248.68992 * 16 15 13 18 18 H 0.96998 * 119.99568 * 0.02562 * 1 2 3 19 19 H 0.96700 * 113.99481 * 297.06469 * 10 9 7 20 20 H 1.08998 * 110.88899 * 85.84027 * 11 9 7 21 21 H 1.09002 * 110.32590 * 322.86309 * 11 9 7 22 22 H 1.09001 * 110.48670 * 278.84514 * 12 11 9 23 23 H 1.09000 * 110.60300 * 156.25181 * 12 11 9 24 24 H 1.08998 * 117.45750 * 158.78726 * 15 13 12 25 25 H 1.08997 * 117.44216 * 13.98973 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5746 2.0014 -1.3972 5 1 1.4098 2.6739 0.6206 6 1 3.5056 1.4640 0.7766 7 6 2.0046 -1.1940 0.0005 8 1 1.4689 -2.1268 0.0963 9 6 3.5057 -1.1974 -0.1327 10 8 3.9336 -0.1541 -1.0104 11 6 4.0160 -2.5876 -0.6328 12 6 5.4758 -2.6358 -0.1172 13 6 5.4109 -1.9564 1.2663 14 1 6.3485 -1.6297 1.7161 15 6 4.2159 -2.2683 2.1696 16 6 4.1707 -1.0455 1.2511 17 1 4.1948 -0.0478 1.6894 18 1 -0.4849 0.8401 -0.0004 19 1 3.6135 -0.2478 -1.9180 20 1 3.9887 -2.6430 -1.7211 21 1 3.4238 -3.3894 -0.1917 22 1 6.1346 -2.0801 -0.7845 23 1 5.8144 -3.6673 -0.0201 24 1 4.3338 -2.0899 3.2384 25 1 3.5929 -3.1216 1.9016 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260988384.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:36 Heat of formation + Delta-G solvation = -48.073580 kcal Electronic energy + Delta-G solvation = -10032.776652 eV Core-core repulsion = 8204.010684 eV Total energy + Delta-G solvation = -1828.765968 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.66612 -36.69931 -34.39968 -31.52453 -29.63279 -25.58487 -24.21124 -20.62950 -20.39870 -19.01760 -17.38548 -16.99664 -16.38282 -15.11564 -14.95281 -14.31250 -13.61481 -13.53812 -13.25619 -12.69834 -12.45039 -12.06540 -11.98442 -11.73636 -11.25538 -10.96587 -10.71461 -10.32125 -10.04506 -8.32684 -6.41782 1.45238 1.48144 1.69403 2.44716 2.87921 3.07807 3.44899 3.94230 4.09904 4.36875 4.38961 4.49486 4.72704 4.86364 4.89830 4.94322 5.15131 5.38140 5.42042 5.42936 5.58108 5.59935 6.08800 6.63195 7.06149 7.36605 8.81251 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.061317 B = 0.021079 C = 0.020436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.535713 B = 1328.043332 C = 1369.824550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.020 3.980 3 Si 1.001 2.999 4 H -0.280 1.280 5 H -0.335 1.335 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.038 0.962 9 C 0.237 3.763 10 O -0.567 6.567 11 C -0.140 4.140 12 C -0.082 4.082 13 C -0.163 4.163 14 H 0.122 0.878 15 C -0.140 4.140 16 C -0.171 4.171 17 H 0.083 0.917 18 H 0.264 0.736 19 H 0.379 0.621 20 H 0.070 0.930 21 H 0.058 0.942 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.111 0.889 25 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.065 -2.952 0.193 11.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.178 4.178 3 Si 0.834 3.166 4 H -0.207 1.207 5 H -0.267 1.267 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.056 0.944 9 C 0.198 3.802 10 O -0.376 6.376 11 C -0.178 4.178 12 C -0.119 4.119 13 C -0.181 4.181 14 H 0.140 0.860 15 C -0.177 4.177 16 C -0.190 4.190 17 H 0.101 0.899 18 H 0.073 0.927 19 H 0.228 0.772 20 H 0.089 0.911 21 H 0.077 0.923 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.129 0.871 25 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.216 -2.679 0.712 11.554 hybrid contribution -0.766 0.692 -0.384 1.101 sum 10.450 -1.987 0.328 10.642 Atomic orbital electron populations 1.70103 1.08391 1.28156 1.51633 1.25846 0.95294 1.03575 0.93111 0.84873 0.76732 0.76526 0.78432 1.20681 1.26735 1.18811 1.21633 0.92059 0.93193 1.50843 0.94383 1.19657 0.90160 0.84450 0.85954 1.86035 1.76836 1.50599 1.24087 1.23219 0.96461 0.97543 1.00566 1.21839 0.95868 1.00633 0.93596 1.23323 0.92937 1.03677 0.98136 0.85998 1.22819 1.00094 0.98053 0.96728 1.23126 1.02017 0.95407 0.98435 0.89919 0.92714 0.77192 0.91090 0.92341 0.90463 0.89985 0.87116 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.60 13.96 21.45 0.30 -59.30 15 2 C 0.02 1.18 5.46 84.65 0.46 1.65 15 3 Si 1.00 50.47 24.82 68.60 1.70 52.18 15 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 15 5 H -0.34 -17.27 7.11 99.48 0.71 -16.56 15 6 H -0.26 -12.94 5.24 99.48 0.52 -12.42 15 7 C -0.54 -30.50 8.90 25.60 0.23 -30.28 15 8 H 0.04 2.38 8.00 -2.91 -0.02 2.35 15 9 C 0.24 10.85 0.65 -9.96 -0.01 10.84 15 10 O -0.57 -24.93 8.86 -148.98 -1.32 -26.25 15 11 C -0.14 -5.27 5.62 32.39 0.18 -5.09 15 12 C -0.08 -2.52 6.78 31.67 0.21 -2.31 15 13 C -0.16 -5.36 7.06 -10.07 -0.07 -5.43 15 14 H 0.12 3.42 8.14 -2.39 -0.02 3.40 15 15 C -0.14 -4.99 9.82 30.60 0.30 -4.68 15 16 C -0.17 -7.30 5.48 -10.07 -0.06 -7.36 15 17 H 0.08 3.79 6.38 -2.39 -0.02 3.77 15 18 H 0.26 15.79 8.31 -92.71 -0.77 15.02 15 19 H 0.38 14.61 9.06 -74.06 -0.67 13.94 15 20 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 21 H 0.06 2.29 7.25 -2.39 -0.02 2.27 15 22 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 23 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.11 3.39 8.14 -2.39 -0.02 3.37 15 25 H 0.08 3.06 7.21 -2.39 -0.02 3.04 15 Total: -1.00 -66.12 203.78 2.26 -63.86 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.32 Total: 12.18 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 1.25 Total: -42.66 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.30 Total: -59.30 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.32 Total: -26.25 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 1.70 Total: 52.18 kcal Total: -66.12 2.26 -63.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260988384.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.788 kcal (2) G-P(sol) polarization free energy of solvation -66.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds