Wall clock time and date at job start Mon Mar 30 2020 01:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48502 * 109.46969 * 269.99792 * 3 2 1 5 5 H 1.48499 * 109.46918 * 29.99655 * 3 2 1 6 6 H 1.48499 * 109.47306 * 149.99853 * 3 2 1 7 7 C 1.37878 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99931 * 359.97438 * 7 2 1 10 10 O 1.42907 * 110.43139 * 59.29939 * 9 7 2 11 11 C 1.54891 * 110.48633 * 296.76271 * 9 7 2 12 12 C 1.54893 * 102.74586 * 203.37571 * 11 9 7 13 13 C 1.54276 * 104.19554 * 37.94161 * 12 11 9 14 14 H 1.08995 * 117.41171 * 116.36842 * 13 12 11 15 15 C 1.52996 * 118.19619 * 270.99977 * 13 12 11 16 16 C 1.54086 * 106.61893 * 336.27802 * 13 12 11 17 17 H 1.09001 * 121.34726 * 138.12708 * 16 13 12 18 18 H 0.96998 * 119.99694 * 0.02562 * 1 2 3 19 19 H 0.96688 * 114.00023 * 300.70196 * 10 9 7 20 20 H 1.09003 * 110.75676 * 321.68861 * 11 9 7 21 21 H 1.08996 * 110.75367 * 84.87783 * 11 9 7 22 22 H 1.09001 * 110.48339 * 156.61498 * 12 11 9 23 23 H 1.09002 * 110.48640 * 279.26393 * 12 11 9 24 24 H 1.09007 * 117.45763 * 201.21373 * 15 13 12 25 25 H 1.09004 * 117.46415 * 346.03696 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 0.4090 -2.5901 -1.1494 11 6 0.4146 -2.6411 1.2976 12 6 0.2333 -4.1744 1.4211 13 6 1.5847 -4.7540 0.9546 14 1 2.1717 -5.3097 1.6859 15 6 1.7681 -5.0517 -0.5349 16 6 2.2318 -3.6889 0.0485 17 1 3.2956 -3.4600 0.1129 18 1 -0.4849 0.8401 -0.0004 19 1 -0.2464 -1.8823 -1.2141 20 1 0.9603 -2.2464 2.1547 21 1 -0.5489 -2.1426 1.1920 22 1 0.0357 -4.4530 2.4562 23 1 -0.5730 -4.5167 0.7723 24 1 2.5448 -5.7642 -0.8131 25 1 0.8745 -5.0636 -1.1589 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260988386.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:39 Heat of formation + Delta-G solvation = -31.988230 kcal Electronic energy + Delta-G solvation = -9961.586244 eV Core-core repulsion = 8133.517789 eV Total energy + Delta-G solvation = -1828.068455 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.52590 -34.22340 -32.00259 -29.88148 -27.38924 -23.71805 -21.73649 -19.34566 -18.44610 -17.02591 -14.86649 -14.80078 -14.07743 -13.74562 -12.56969 -12.08682 -11.50726 -11.40496 -11.15627 -10.79710 -10.68298 -10.40586 -10.14681 -9.77414 -9.33954 -9.05835 -8.74980 -8.51564 -7.93195 -6.13938 -4.20201 3.26343 3.33018 3.36561 4.35819 4.55654 5.14910 5.50380 5.71546 5.81858 5.98400 6.18297 6.43192 6.50250 6.60652 6.62890 6.95179 7.01595 7.13125 7.28893 7.58569 7.63166 7.92216 8.26595 8.81262 9.47522 9.63702 10.93137 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.076016 B = 0.017001 C = 0.016285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.256443 B = 1646.542340 C = 1718.931637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.274 3.726 10 O -0.587 6.587 11 C -0.124 4.124 12 C -0.096 4.096 13 C -0.178 4.178 14 H 0.093 0.907 15 C -0.157 4.157 16 C -0.131 4.131 17 H 0.101 0.899 18 H 0.266 0.734 19 H 0.378 0.622 20 H 0.055 0.945 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.966 -4.296 1.617 4.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.235 3.765 10 O -0.396 6.396 11 C -0.162 4.162 12 C -0.133 4.133 13 C -0.196 4.196 14 H 0.111 0.889 15 C -0.194 4.194 16 C -0.149 4.149 17 H 0.119 0.881 18 H 0.076 0.924 19 H 0.229 0.771 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.178 -4.694 1.527 5.075 hybrid contribution 0.223 1.433 0.226 1.467 sum 1.401 -3.261 1.753 3.959 Atomic orbital electron populations 1.69666 1.05907 1.27251 1.51217 1.25009 0.94999 0.99363 0.93997 0.86486 0.79816 0.82842 0.78195 1.20534 1.21142 1.19877 1.21694 0.93569 0.90919 1.50616 0.92253 1.18919 0.85478 0.89822 0.82327 1.86091 1.51799 1.54451 1.47270 1.23097 1.01494 0.91647 0.99944 1.22007 0.94797 0.97862 0.98677 1.23223 0.99469 1.04301 0.92638 0.88888 1.23133 1.02687 0.98518 0.95084 1.23775 0.98775 0.89158 1.03222 0.88076 0.92441 0.77143 0.92639 0.90953 0.93317 0.92475 0.90205 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 10.50 55.43 0.58 -24.04 15 2 C 0.07 1.84 5.27 -17.82 -0.09 1.74 15 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.53 -14.72 8.28 -34.44 -0.29 -15.01 15 8 H 0.06 1.64 7.60 -52.49 -0.40 1.24 15 9 C 0.27 7.07 0.78 -90.11 -0.07 7.00 15 10 O -0.59 -15.73 12.23 -35.23 -0.43 -16.17 15 11 C -0.12 -2.97 5.39 -24.74 -0.13 -3.11 15 12 C -0.10 -1.97 6.60 -25.07 -0.17 -2.13 15 13 C -0.18 -3.54 6.86 -89.39 -0.61 -4.15 15 14 H 0.09 1.64 8.14 -51.93 -0.42 1.21 15 15 C -0.16 -3.11 9.87 -25.50 -0.25 -3.37 15 16 C -0.13 -2.99 6.34 -88.16 -0.56 -3.55 15 17 H 0.10 2.24 7.90 -51.93 -0.41 1.83 15 18 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 19 H 0.38 10.29 7.20 45.56 0.33 10.62 15 20 H 0.05 1.35 8.05 -51.93 -0.42 0.94 15 21 H 0.07 1.84 7.45 -51.93 -0.39 1.45 15 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.06 1.17 8.14 -51.93 -0.42 0.74 15 24 H 0.08 1.36 8.14 -51.93 -0.42 0.93 15 25 H 0.09 1.94 7.67 -51.93 -0.40 1.55 15 LS Contribution 209.72 15.07 3.16 3.16 Total: -1.00 -27.92 209.72 -6.39 -34.31 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -2.51 Total: 9.20 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -2.17 Total: -22.57 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.58 Total: -24.04 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.43 Total: -16.17 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -27.92 -6.39 -34.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260988386.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.323 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds