Wall clock time and date at job start Mon Mar 30 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46991 * 2 1 4 4 C 1.53786 * 113.61503 * 85.86302 * 3 2 1 5 5 C 1.54049 * 86.98426 * 140.01654 * 4 3 2 6 6 C 1.53002 * 113.62024 * 220.02020 * 5 4 3 7 7 C 1.50697 * 109.47431 * 272.50042 * 6 5 4 8 8 H 1.08003 * 119.99712 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00388 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00630 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99807 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46940 * 90.00284 * 11 9 7 13 13 H 1.48497 * 109.47168 * 210.00202 * 11 9 7 14 14 H 1.48504 * 109.47005 * 329.99848 * 11 9 7 15 15 C 1.53781 * 113.61337 * 183.47096 * 3 2 1 16 16 H 1.09006 * 109.47205 * 59.99989 * 1 2 3 17 17 H 1.08998 * 109.47408 * 179.97438 * 1 2 3 18 18 H 1.09000 * 109.47147 * 299.99916 * 1 2 3 19 19 H 1.09000 * 109.47147 * 240.00084 * 2 1 3 20 20 H 1.08997 * 109.47118 * 119.99904 * 2 1 3 21 21 H 1.09002 * 112.85017 * 314.66684 * 3 2 1 22 22 H 1.08992 * 113.61675 * 254.61398 * 4 3 2 23 23 H 1.09000 * 113.60973 * 25.51686 * 4 3 2 24 24 H 1.08996 * 113.68970 * 89.12734 * 5 4 3 25 25 H 1.08997 * 109.47064 * 32.50151 * 6 5 4 26 26 H 1.09006 * 109.47182 * 152.49563 * 6 5 4 27 27 H 0.96994 * 120.00706 * 179.97438 * 10 9 7 28 28 H 1.08999 * 113.61567 * 334.48261 * 15 3 2 29 29 H 1.08998 * 113.61196 * 105.38615 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.1495 2.0572 1.4054 5 6 3.4653 2.7031 0.9317 6 6 4.5707 2.6892 1.9895 7 6 4.4507 3.9150 2.8577 8 1 3.6649 4.6326 2.6732 9 6 5.3446 4.1211 3.8869 10 7 5.2403 5.1911 4.6443 11 14 6.7043 2.8803 4.2056 12 1 7.9073 3.2511 3.4179 13 1 7.0414 2.8759 5.6518 14 1 6.2448 1.5275 3.8004 15 6 3.5713 1.5545 -0.0853 16 1 -0.3634 0.5139 -0.8900 17 1 -0.3634 -1.0276 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 1.8933 -0.5138 -0.8900 20 1 1.8933 -0.5138 0.8900 21 1 1.5153 2.0770 -0.7144 22 1 1.3633 2.7782 1.6291 23 1 2.2853 1.3188 2.1955 24 1 3.3319 3.6824 0.4720 25 1 4.4720 1.7960 2.6063 26 1 5.5437 2.6856 1.4982 27 1 5.8690 5.3359 5.3686 28 1 4.0952 0.6789 0.2981 29 1 3.9321 1.8700 -1.0643 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992936.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:21 Heat of formation + Delta-G solvation = -27.687042 kcal Electronic energy + Delta-G solvation = -9570.507205 eV Core-core repulsion = 7878.458358 eV Total energy + Delta-G solvation = -1692.048847 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.09315 -35.21667 -33.69478 -30.97772 -26.44870 -26.28476 -23.87425 -21.08125 -20.28477 -18.81480 -16.54887 -16.19050 -15.35923 -15.25482 -14.51478 -14.03292 -13.99371 -13.27238 -13.19712 -12.80652 -12.75704 -12.36355 -12.01928 -11.76879 -11.55748 -11.27257 -11.20616 -10.85769 -10.69467 -10.46160 -8.28581 -6.31664 1.34767 1.36742 1.49121 2.36527 3.06378 3.76919 3.90566 3.94056 4.14230 4.46055 4.46267 4.66380 4.81559 4.91359 4.98592 5.05298 5.09841 5.16599 5.19516 5.23208 5.36376 5.42528 5.50924 5.61801 5.71204 5.87360 6.31313 6.76135 7.32501 8.88688 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.078932 B = 0.010776 C = 0.010367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.651748 B = 2597.700194 C = 2700.356049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.098 4.098 4 C -0.126 4.126 5 C -0.106 4.106 6 C -0.002 4.002 7 C -0.526 4.526 8 H 0.028 0.972 9 C 0.000 4.000 10 N -0.955 5.955 11 Si 0.953 3.047 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.248 1.248 15 C -0.128 4.128 16 H 0.058 0.942 17 H 0.063 0.937 18 H 0.045 0.955 19 H 0.073 0.927 20 H 0.056 0.944 21 H 0.092 0.908 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.018 0.982 26 H 0.014 0.986 27 H 0.265 0.735 28 H 0.080 0.920 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.996 -11.584 -9.269 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.116 4.116 4 C -0.163 4.163 5 C -0.125 4.125 6 C -0.039 4.039 7 C -0.564 4.564 8 H 0.046 0.954 9 C -0.196 4.196 10 N -0.596 5.596 11 Si 0.776 3.224 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.171 1.171 15 C -0.165 4.165 16 H 0.077 0.923 17 H 0.082 0.918 18 H 0.064 0.936 19 H 0.092 0.908 20 H 0.074 0.926 21 H 0.110 0.890 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.036 0.964 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.932 -11.503 -9.133 15.494 hybrid contribution 0.604 0.339 0.690 0.977 sum -4.328 -11.164 -8.443 14.651 Atomic orbital electron populations 1.21739 0.95259 1.01912 1.01696 1.21481 0.96407 0.94914 1.02040 1.22492 0.95542 0.97215 0.96368 1.23015 0.96918 0.99214 0.97193 1.22412 0.96103 0.97368 0.96607 1.19510 0.95264 0.94956 0.94191 1.21511 1.13552 1.07119 1.14196 0.95405 1.26061 1.00587 0.97472 0.95461 1.70076 1.39220 1.29600 1.20716 0.85622 0.79060 0.80383 0.77352 1.19114 1.20909 1.17119 1.23033 0.96572 0.98124 0.98811 0.92266 0.91831 0.93600 0.90825 0.92557 0.89004 0.93337 0.91148 0.91748 0.96370 0.96721 0.92574 0.90172 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.25 15 2 C -0.11 -2.52 5.76 30.59 0.18 -2.34 15 3 C -0.10 -2.72 3.64 -10.26 -0.04 -2.76 15 4 C -0.13 -4.51 7.20 31.21 0.22 -4.29 15 5 C -0.11 -4.31 3.60 -10.18 -0.04 -4.34 15 6 C 0.00 -0.09 3.88 29.85 0.12 0.02 15 7 C -0.53 -31.52 9.65 25.60 0.25 -31.27 15 8 H 0.03 1.84 7.99 -2.91 -0.02 1.81 15 9 C 0.00 0.01 5.47 84.65 0.46 0.47 15 10 N -0.95 -61.65 13.96 21.44 0.30 -61.35 15 11 Si 0.95 45.56 27.47 68.60 1.88 47.44 15 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 15 14 H -0.25 -11.02 6.54 99.48 0.65 -10.36 15 15 C -0.13 -3.95 7.20 31.12 0.22 -3.73 15 16 H 0.06 1.08 8.14 -2.38 -0.02 1.06 15 17 H 0.06 1.07 8.14 -2.39 -0.02 1.05 15 18 H 0.04 0.99 8.14 -2.39 -0.02 0.97 15 19 H 0.07 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.06 1.34 7.88 -2.39 -0.02 1.32 15 21 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.07 2.57 7.68 -2.39 -0.02 2.55 15 24 H 0.06 2.76 8.12 -2.39 -0.02 2.74 15 25 H 0.02 0.87 6.91 -2.39 -0.02 0.85 15 26 H 0.01 0.69 7.57 -2.38 -0.02 0.67 15 27 H 0.27 15.93 8.31 -92.71 -0.77 15.16 15 28 H 0.08 2.39 8.06 -2.39 -0.02 2.37 15 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 15 Total: -1.00 -65.93 237.98 5.30 -60.64 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.02 Total: 3.75 kcal Atomic # 6 Polarization: -52.57 SS G_CDS: 2.09 Total: -50.48 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.30 Total: -61.35 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Total: -65.93 5.30 -60.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992936.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.949 kcal (2) G-P(sol) polarization free energy of solvation -65.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds