Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.31549 * 123.19158 * 244.72798 * 12 9 7 14 14 C 1.51937 * 107.36469 * 179.38020 * 13 12 9 15 15 C 1.54843 * 101.72791 * 345.20670 * 14 13 12 16 16 O 1.35231 * 123.20062 * 65.02602 * 12 9 7 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 19 19 H 1.00902 * 111.00206 * 63.95508 * 11 9 7 20 20 H 1.08003 * 126.31943 * 359.52277 * 13 12 9 21 21 H 1.08998 * 111.14646 * 227.00726 * 14 13 12 22 22 H 1.09001 * 110.80999 * 103.25516 * 14 13 12 23 23 H 1.09003 * 110.96998 * 265.51829 * 15 14 13 24 24 H 1.09001 * 110.97508 * 141.74663 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 0.4063 -2.5823 1.1937 12 6 2.2302 -3.6447 -0.0104 13 6 2.3411 -4.4930 -1.0096 14 6 3.4361 -5.4815 -0.6460 15 6 4.1269 -4.7638 0.5395 16 8 3.0744 -3.9016 1.0143 17 1 -0.4850 0.8401 -0.0004 18 1 0.9642 -2.5347 2.0330 19 1 -0.3010 -1.8627 1.1883 20 1 1.7622 -4.4865 -1.9215 21 1 4.1297 -5.6224 -1.4748 22 1 3.0092 -6.4336 -0.3307 23 1 4.9833 -4.1823 0.1979 24 1 4.4234 -5.4773 1.3084 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002093.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = -45.154669 kcal Electronic energy + Delta-G solvation = -9730.679555 eV Core-core repulsion = 7836.614250 eV Total energy + Delta-G solvation = -1894.065306 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.39229 -36.59244 -33.44200 -32.97109 -30.10764 -27.87690 -24.48248 -22.69469 -20.79646 -18.70084 -17.58383 -16.97545 -16.44461 -15.78698 -15.34502 -14.79596 -13.77791 -13.46652 -13.23155 -13.00119 -12.83297 -12.60595 -12.25967 -12.24539 -11.85561 -11.70563 -10.76357 -9.35870 -8.96418 -8.17061 -6.44054 1.36385 1.37064 1.45515 1.53533 2.35726 2.81322 3.00837 3.78000 4.15025 4.29620 4.48010 4.64971 4.77867 4.87864 5.04065 5.17938 5.32362 5.57485 5.68224 5.98929 6.53454 6.61190 6.82742 7.03817 7.31444 8.77813 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.067621 B = 0.014783 C = 0.013501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.973035 B = 1893.573142 C = 2073.435243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.567 4.567 8 H 0.045 0.955 9 C 0.256 3.744 10 H 0.033 0.967 11 N -0.840 5.840 12 C 0.097 3.903 13 C -0.328 4.328 14 C -0.103 4.103 15 C 0.032 3.968 16 O -0.334 6.334 17 H 0.271 0.729 18 H 0.320 0.680 19 H 0.348 0.652 20 H 0.138 0.862 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.269 -5.757 -0.215 8.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.606 4.606 8 H 0.064 0.936 9 C 0.145 3.855 10 H 0.051 0.949 11 N -0.369 5.369 12 C 0.051 3.949 13 C -0.348 4.348 14 C -0.140 4.140 15 C -0.042 4.042 16 O -0.248 6.248 17 H 0.080 0.920 18 H 0.129 0.871 19 H 0.163 0.837 20 H 0.156 0.844 21 H 0.115 0.885 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.893 -6.299 -0.256 8.630 hybrid contribution 0.592 1.831 -0.103 1.927 sum 6.485 -4.469 -0.359 7.884 Atomic orbital electron populations 1.69833 1.06957 1.28363 1.50262 1.25781 0.95878 1.02540 0.93604 0.85428 0.78457 0.78543 0.78416 1.19826 1.20156 1.19817 1.21948 0.93372 0.92369 1.52924 0.93639 1.17783 0.88224 0.87945 0.91515 0.94922 1.59424 1.18101 1.55257 1.04099 1.21947 0.91537 0.94102 0.87303 1.23694 1.08571 1.00374 1.02158 1.21965 0.95856 0.98039 0.98097 1.24194 0.89791 0.92497 0.97719 1.86757 1.36984 1.66647 1.34462 0.91983 0.87072 0.83731 0.84412 0.88487 0.89514 0.90784 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.42 11.55 21.45 0.25 -51.17 14 2 C 0.02 1.24 5.38 84.66 0.46 1.69 14 3 Si 0.97 43.51 29.54 68.60 2.03 45.54 14 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 14 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 14 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 14 7 C -0.57 -32.17 8.71 25.60 0.22 -31.95 14 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 14 9 C 0.26 13.75 3.13 43.42 0.14 13.89 14 10 H 0.03 1.90 8.03 -2.39 -0.02 1.89 14 11 N -0.84 -43.49 9.18 -174.96 -1.61 -45.10 14 12 C 0.10 4.57 5.63 25.12 0.14 4.71 14 13 C -0.33 -13.18 10.83 25.52 0.28 -12.91 14 14 C -0.10 -3.07 7.15 30.87 0.22 -2.85 14 15 C 0.03 1.01 8.12 72.61 0.59 1.60 14 16 O -0.33 -14.70 11.11 -85.13 -0.95 -15.64 14 17 H 0.27 14.32 8.31 -92.70 -0.77 13.55 14 18 H 0.32 16.22 8.97 -89.69 -0.80 15.42 14 19 H 0.35 18.76 7.09 -89.69 -0.64 18.13 14 20 H 0.14 5.34 8.06 -2.91 -0.02 5.32 14 21 H 0.10 2.38 8.14 -2.39 -0.02 2.36 14 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 14 23 H 0.07 2.16 8.14 -2.39 -0.02 2.15 14 24 H 0.12 2.94 8.14 -2.39 -0.02 2.92 14 Total: -1.00 -61.14 212.40 1.53 -59.61 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -0.23 Total: 32.58 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 2.04 Total: -25.81 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -1.36 Total: -96.27 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.95 Total: -15.64 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -61.14 1.53 -59.61 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002093.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.456 kcal (2) G-P(sol) polarization free energy of solvation -61.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds