Wall clock time and date at job start Mon Mar 30 2020 02:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 N 1.46896 * 109.47239 * 59.99971 * 9 7 2 12 12 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.31543 * 123.19887 * 115.00129 * 12 9 7 14 14 C 1.51927 * 107.37478 * 180.48180 * 13 12 9 15 15 C 1.54852 * 101.66919 * 15.15802 * 14 13 12 16 16 O 1.35234 * 123.19510 * 294.70528 * 12 9 7 17 17 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 18 18 H 1.00900 * 111.00550 * 59.99964 * 11 9 7 19 19 H 1.00896 * 111.00310 * 183.95550 * 11 9 7 20 20 H 1.08007 * 126.31446 * 0.43915 * 13 12 9 21 21 H 1.08998 * 110.99406 * 133.25595 * 14 13 12 22 22 H 1.09005 * 110.98568 * 257.02718 * 14 13 12 23 23 H 1.08993 * 110.96903 * 94.27139 * 15 14 13 24 24 H 1.09004 * 110.97102 * 218.00198 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.3446 -4.4944 0.9981 14 6 3.4359 -5.4845 0.6278 15 6 4.1272 -4.7611 -0.5540 16 8 3.0708 -3.9001 -1.0275 17 1 -0.4850 0.8401 0.0004 18 1 0.9651 -2.5260 -2.0381 19 1 -0.1572 -3.4138 -1.1907 20 1 1.7694 -4.4889 1.9122 21 1 4.1293 -5.6293 1.4563 22 1 3.0086 -6.4350 0.3084 23 1 4.9833 -4.1813 -0.2094 24 1 4.4245 -5.4711 -1.3258 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261002094.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:46 Heat of formation + Delta-G solvation = -16.520815 kcal Electronic energy + Delta-G solvation = -9721.101287 eV Core-core repulsion = 7828.277639 eV Total energy + Delta-G solvation = -1892.823648 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.90378 -34.37860 -31.64710 -31.38070 -28.43842 -25.84004 -22.69976 -21.11080 -19.16291 -16.52521 -15.86682 -15.42669 -14.60573 -14.03142 -13.77170 -12.45582 -12.42268 -11.80161 -11.51823 -11.35524 -11.04459 -10.91282 -10.75106 -10.59174 -9.88841 -9.16190 -8.41590 -7.48301 -7.08093 -5.87185 -4.01883 3.02832 3.37621 3.41584 3.45390 4.26852 4.50428 5.12876 5.34915 5.39455 5.50773 5.84290 6.07374 6.17266 6.35815 6.49133 6.65027 7.17207 7.39840 7.91605 8.06016 8.16710 8.64070 9.03221 9.14061 9.65896 11.17371 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.067296 B = 0.014785 C = 0.013489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.974271 B = 1893.295095 C = 2075.191309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.083 3.917 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.273 3.727 10 H 0.062 0.938 11 N -0.807 5.807 12 C 0.081 3.919 13 C -0.336 4.336 14 C -0.112 4.112 15 C 0.040 3.960 16 O -0.311 6.311 17 H 0.257 0.743 18 H 0.325 0.675 19 H 0.299 0.701 20 H 0.136 0.864 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.979 -7.150 0.119 8.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.123 4.123 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.163 3.837 10 H 0.080 0.920 11 N -0.332 5.332 12 C 0.033 3.967 13 C -0.357 4.357 14 C -0.150 4.150 15 C -0.035 4.035 16 O -0.224 6.224 17 H 0.067 0.933 18 H 0.137 0.863 19 H 0.109 0.891 20 H 0.154 0.846 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.447 -6.261 0.134 7.681 hybrid contribution 1.211 -0.188 0.042 1.227 sum 5.658 -6.450 0.176 8.582 Atomic orbital electron populations 1.70088 1.05689 1.25972 1.46555 1.24931 0.94694 0.98616 0.94095 0.86739 0.79684 0.83336 0.78568 1.20270 1.21269 1.20344 1.20752 0.92356 0.89420 1.54650 0.92773 1.18256 0.86215 0.87483 0.91726 0.92038 1.59137 1.27861 1.41698 1.04513 1.23927 0.91680 0.95123 0.85987 1.23394 1.08476 1.00720 1.03075 1.21919 0.97078 0.98490 0.97478 1.23855 0.91007 0.92356 0.96308 1.86854 1.35901 1.65487 1.34150 0.93276 0.86341 0.89093 0.84596 0.91253 0.91614 0.91400 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.01 12.77 55.43 0.71 -24.30 14 2 C 0.08 2.38 5.39 -17.82 -0.10 2.28 14 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 14 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 14 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 14 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 14 7 C -0.53 -15.19 8.71 -34.44 -0.30 -15.49 14 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 14 9 C 0.27 7.08 3.04 -70.02 -0.21 6.86 14 10 H 0.06 1.70 8.03 -51.93 -0.42 1.28 14 11 N -0.81 -19.93 8.53 -6.65 -0.06 -19.99 14 12 C 0.08 1.84 5.61 -36.15 -0.20 1.63 14 13 C -0.34 -6.73 10.82 -35.55 -0.38 -7.11 14 14 C -0.11 -1.81 7.15 -26.30 -0.19 -2.00 14 15 C 0.04 0.67 8.13 38.13 0.31 0.98 14 16 O -0.31 -6.74 11.11 -17.40 -0.19 -6.93 14 17 H 0.26 7.24 8.31 -40.82 -0.34 6.90 14 18 H 0.32 7.91 8.96 -39.29 -0.35 7.55 14 19 H 0.30 6.57 9.06 -39.29 -0.36 6.21 14 20 H 0.14 2.60 8.06 -52.48 -0.42 2.17 14 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 14 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 14 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 14 24 H 0.09 1.18 8.14 -51.93 -0.42 0.76 14 LS Contribution 214.84 15.07 3.24 3.24 Total: -1.00 -30.31 214.84 -5.18 -35.49 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -2.78 Total: 8.66 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.07 Total: -12.85 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.65 Total: -44.29 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.19 Total: -6.93 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -30.31 -5.18 -35.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002094.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.969 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds