Wall clock time and date at job start Mon Mar 30 2020 02:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 N 1.46896 * 109.47239 * 59.99971 * 9 7 2 12 12 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.31543 * 123.19887 * 115.00129 * 12 9 7 14 14 C 1.51927 * 107.37478 * 180.48180 * 13 12 9 15 15 C 1.54852 * 101.66919 * 15.15802 * 14 13 12 16 16 O 1.35234 * 123.19510 * 294.70528 * 12 9 7 17 17 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 18 18 H 1.00900 * 111.00550 * 59.99964 * 11 9 7 19 19 H 1.00896 * 111.00310 * 183.95550 * 11 9 7 20 20 H 1.08007 * 126.31446 * 0.43915 * 13 12 9 21 21 H 1.08998 * 110.99406 * 133.25595 * 14 13 12 22 22 H 1.09005 * 110.98568 * 257.02718 * 14 13 12 23 23 H 1.08993 * 110.96903 * 94.27139 * 15 14 13 24 24 H 1.09004 * 110.97102 * 218.00198 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.3446 -4.4944 0.9981 14 6 3.4359 -5.4845 0.6278 15 6 4.1272 -4.7611 -0.5540 16 8 3.0708 -3.9001 -1.0275 17 1 -0.4850 0.8401 0.0004 18 1 0.9651 -2.5260 -2.0381 19 1 -0.1572 -3.4138 -1.1907 20 1 1.7694 -4.4889 1.9122 21 1 4.1293 -5.6293 1.4563 22 1 3.0086 -6.4350 0.3084 23 1 4.9833 -4.1813 -0.2094 24 1 4.4245 -5.4711 -1.3258 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002094.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:46 Heat of formation + Delta-G solvation = -39.029453 kcal Electronic energy + Delta-G solvation = -9722.077335 eV Core-core repulsion = 7828.277639 eV Total energy + Delta-G solvation = -1893.799696 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.43694 -36.35265 -33.56136 -33.03692 -30.04394 -27.90067 -24.39597 -22.71176 -20.82194 -18.59159 -17.45012 -16.97892 -16.48911 -15.98830 -15.51768 -14.41667 -13.83964 -13.47453 -13.32528 -13.02460 -12.74078 -12.60256 -12.32059 -12.26461 -11.91824 -11.22730 -10.58218 -9.13893 -8.93202 -8.02056 -6.24700 1.36351 1.43976 1.46518 1.53830 2.46451 2.78304 3.22447 3.75447 4.10607 4.25478 4.40709 4.53542 4.73990 4.86881 5.00726 5.16322 5.18296 5.67686 5.73700 6.07036 6.44127 6.61725 6.99742 7.20658 7.47109 9.01437 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.067296 B = 0.014785 C = 0.013489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.974271 B = 1893.295095 C = 2075.191309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.036 3.964 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.552 4.552 8 H 0.043 0.957 9 C 0.272 3.728 10 H 0.034 0.966 11 N -0.816 5.816 12 C 0.049 3.951 13 C -0.321 4.321 14 C -0.105 4.105 15 C 0.032 3.968 16 O -0.336 6.336 17 H 0.259 0.741 18 H 0.325 0.675 19 H 0.313 0.687 20 H 0.139 0.861 21 H 0.095 0.905 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.246 -7.853 0.251 10.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.169 4.169 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.590 4.590 8 H 0.062 0.938 9 C 0.162 3.838 10 H 0.052 0.948 11 N -0.342 5.342 12 C 0.001 3.999 13 C -0.341 4.341 14 C -0.142 4.142 15 C -0.042 4.042 16 O -0.250 6.250 17 H 0.068 0.932 18 H 0.137 0.863 19 H 0.124 0.876 20 H 0.157 0.843 21 H 0.114 0.886 22 H 0.106 0.894 23 H 0.091 0.909 24 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.724 -6.980 0.273 9.031 hybrid contribution 0.830 -0.063 0.032 0.833 sum 6.553 -7.043 0.305 9.626 Atomic orbital electron populations 1.70205 1.07046 1.26817 1.47383 1.25698 0.95555 1.01963 0.93638 0.85702 0.78471 0.79155 0.78683 1.20001 1.20561 1.19593 1.21033 0.92072 0.91159 1.54771 0.93842 1.17895 0.86710 0.88317 0.90874 0.94823 1.58978 1.28183 1.42815 1.04178 1.23338 0.93087 0.95708 0.87733 1.23802 1.08173 1.00396 1.01776 1.21989 0.96092 0.98067 0.98086 1.24216 0.89844 0.92407 0.97737 1.86789 1.37009 1.66887 1.34320 0.93240 0.86342 0.87594 0.84285 0.88645 0.89386 0.90935 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.40 12.77 21.45 0.27 -52.13 14 2 C 0.04 2.03 5.39 84.66 0.46 2.48 14 3 Si 0.95 44.68 29.54 68.60 2.03 46.71 14 4 H -0.27 -12.65 7.11 99.48 0.71 -11.95 14 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 14 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 14 7 C -0.55 -31.87 8.71 25.60 0.22 -31.65 14 8 H 0.04 2.53 7.74 -2.91 -0.02 2.51 14 9 C 0.27 14.36 3.04 43.43 0.13 14.49 14 10 H 0.03 1.93 8.03 -2.39 -0.02 1.91 14 11 N -0.82 -40.92 8.53 -174.95 -1.49 -42.41 14 12 C 0.05 2.21 5.61 25.13 0.14 2.35 14 13 C -0.32 -12.33 10.82 25.52 0.28 -12.05 14 14 C -0.11 -3.02 7.15 30.87 0.22 -2.80 14 15 C 0.03 0.98 8.13 72.61 0.59 1.57 14 16 O -0.34 -14.21 11.11 -85.17 -0.95 -15.16 14 17 H 0.26 14.64 8.31 -92.71 -0.77 13.87 14 18 H 0.32 16.07 8.96 -89.69 -0.80 15.27 14 19 H 0.31 13.92 9.06 -89.70 -0.81 13.11 14 20 H 0.14 5.14 8.06 -2.91 -0.02 5.12 14 21 H 0.10 2.28 8.14 -2.39 -0.02 2.26 14 22 H 0.09 2.20 8.14 -2.38 -0.02 2.18 14 23 H 0.07 2.10 8.14 -2.39 -0.02 2.08 14 24 H 0.12 2.82 8.14 -2.39 -0.02 2.80 14 Total: -1.00 -64.49 214.84 1.49 -63.00 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.41 Total: 25.59 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 2.04 Total: -25.61 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -1.22 Total: -94.54 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.95 Total: -15.16 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.49 1.49 -63.00 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002094.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.973 kcal (2) G-P(sol) polarization free energy of solvation -64.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds