Wall clock time and date at job start Mon Mar 30 2020 01:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48502 * 109.46988 * 270.00403 * 3 2 1 5 5 H 1.48504 * 109.46909 * 30.00316 * 3 2 1 6 6 H 1.48499 * 109.47143 * 150.00217 * 3 2 1 7 7 C 1.37880 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.50692 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.30684 * 118.32800 * 94.99496 * 10 9 7 12 12 C 1.50443 * 122.49701 * 180.43477 * 11 10 9 13 13 C 1.53256 * 109.44026 * 342.54211 * 12 11 10 14 14 C 1.53511 * 108.19295 * 46.80101 * 13 12 11 15 15 O 1.35135 * 118.33007 * 275.02334 * 10 9 7 16 16 H 0.96996 * 119.99890 * 359.97438 * 1 2 3 17 17 H 1.08997 * 109.46980 * 59.99747 * 9 7 2 18 18 H 1.09005 * 109.46870 * 300.00204 * 9 7 2 19 19 H 1.07997 * 118.75568 * 0.45854 * 11 10 9 20 20 H 1.09003 * 109.48128 * 222.55724 * 12 11 10 21 21 H 1.09000 * 109.48611 * 102.53790 * 12 11 10 22 22 H 1.09002 * 109.72700 * 166.49113 * 13 12 11 23 23 H 1.08998 * 109.72386 * 287.11725 * 13 12 11 24 24 H 1.08994 * 109.70504 * 57.31370 * 14 13 12 25 25 H 1.09000 * 109.70120 * 177.93261 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.5570 -4.1811 1.1454 12 6 3.5320 -5.3215 1.2553 13 6 3.6966 -5.9857 -0.1161 14 6 3.9002 -4.8809 -1.1623 15 8 2.7260 -4.0644 -1.1855 16 1 -0.4850 0.8400 0.0004 17 1 0.6240 -2.5567 -0.8902 18 1 0.6246 -2.5571 0.8897 19 1 2.1099 -3.7912 2.0479 20 1 3.1565 -6.0532 1.9706 21 1 4.4966 -4.9438 1.5943 22 1 4.5644 -6.6451 -0.1037 23 1 2.8018 -6.5597 -0.3566 24 1 4.7644 -4.2739 -0.8925 25 1 4.0568 -5.3286 -2.1437 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261003185.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:52 Heat of formation + Delta-G solvation = -43.321322 kcal Electronic energy + Delta-G solvation = -9491.654276 eV Core-core repulsion = 7663.094381 eV Total energy + Delta-G solvation = -1828.559895 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.31365 -33.53384 -33.28642 -31.40276 -27.61869 -24.73737 -23.40626 -21.41194 -18.21160 -16.36867 -15.73851 -15.05422 -14.59272 -14.03837 -13.59563 -12.51254 -12.33963 -12.25674 -11.83573 -11.34365 -10.91896 -10.68291 -10.42844 -10.25499 -10.03885 -9.47307 -9.27223 -8.40571 -7.34675 -6.02419 -4.05871 3.24435 3.32722 3.38620 3.44323 4.21456 4.46743 5.14192 5.22214 5.32301 5.37907 5.74200 5.89285 5.98761 6.13174 6.18104 6.44177 6.64481 7.10905 7.35174 7.47062 7.60980 7.92660 8.30844 8.63096 8.97166 9.56843 11.07733 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.079163 B = 0.012257 C = 0.011963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.614542 B = 2283.876158 C = 2339.918975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.058 3.942 10 C 0.127 3.873 11 C -0.328 4.328 12 C -0.069 4.069 13 C -0.159 4.159 14 C 0.058 3.942 15 O -0.317 6.317 16 H 0.263 0.737 17 H 0.034 0.966 18 H 0.044 0.956 19 H 0.115 0.885 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.261 -8.041 0.094 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.021 3.979 10 C 0.082 3.918 11 C -0.348 4.348 12 C -0.106 4.106 13 C -0.196 4.196 14 C -0.018 4.018 15 O -0.230 6.230 16 H 0.072 0.928 17 H 0.052 0.948 18 H 0.062 0.938 19 H 0.133 0.867 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.032 -7.878 -0.093 9.922 hybrid contribution 0.641 0.801 0.258 1.058 sum 6.673 -7.077 0.165 9.728 Atomic orbital electron populations 1.69956 1.06030 1.26884 1.50550 1.24997 0.94923 0.99280 0.95162 0.86484 0.79757 0.82964 0.78189 1.20529 1.21108 1.19832 1.21000 0.93070 0.89802 1.51006 0.92498 1.18401 0.92214 0.88342 0.98958 1.21471 0.94226 0.92568 0.83525 1.21950 1.10320 1.04472 0.98023 1.20191 0.98361 0.96239 0.95838 1.22224 1.02240 0.98230 0.96949 1.22851 0.87731 0.91679 0.99520 1.85937 1.41774 1.65153 1.30162 0.92784 0.94818 0.93825 0.86692 0.91941 0.92510 0.91231 0.91145 0.92564 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.28 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 15 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.51 -14.92 9.09 -34.44 -0.31 -15.23 15 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 15 9 C 0.06 1.57 5.22 -29.04 -0.15 1.42 15 10 C 0.13 3.00 5.81 -35.94 -0.21 2.79 15 11 C -0.33 -6.90 9.52 -36.06 -0.34 -7.25 15 12 C -0.07 -1.14 6.23 -27.88 -0.17 -1.32 15 13 C -0.16 -2.33 6.24 -26.33 -0.16 -2.50 15 14 C 0.06 0.96 7.09 37.42 0.27 1.22 15 15 O -0.32 -7.02 10.32 -17.10 -0.18 -7.20 15 16 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 17 H 0.03 0.97 8.14 -51.93 -0.42 0.55 15 18 H 0.04 1.22 7.85 -51.93 -0.41 0.81 15 19 H 0.12 2.46 7.83 -52.49 -0.41 2.05 15 20 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 LS Contribution 217.86 15.07 3.28 3.28 Total: -1.00 -30.74 217.86 -5.68 -36.43 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -3.32 Total: -3.92 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -1.19 Total: -19.28 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.18 Total: -7.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -30.74 -5.68 -36.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261003185.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.895 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds