Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47177 * 2 1 4 4 C 1.50706 * 109.46897 * 239.99975 * 2 1 3 5 5 H 1.07992 * 120.00001 * 239.99827 * 4 2 1 6 6 C 1.37874 * 119.99800 * 60.00406 * 4 2 1 7 7 N 1.31511 * 120.00591 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46878 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47187 * 119.99509 * 8 6 4 11 11 H 1.48492 * 109.47049 * 239.99751 * 8 6 4 12 12 C 1.53002 * 109.47392 * 120.00331 * 2 1 3 13 13 H 1.08995 * 115.54547 * 39.84031 * 12 2 1 14 14 C 1.52992 * 117.49982 * 185.51750 * 12 2 1 15 15 C 1.53001 * 117.49602 * 254.17853 * 12 2 1 16 16 C 1.53002 * 117.49882 * 359.97438 * 15 12 2 17 17 C 1.52996 * 117.49958 * 145.01773 * 15 12 2 18 18 H 1.08998 * 109.47281 * 174.65631 * 1 2 3 19 19 H 1.08997 * 109.47097 * 294.65899 * 1 2 3 20 20 H 1.09006 * 109.46697 * 54.65580 * 1 2 3 21 21 H 0.97001 * 120.00643 * 180.02562 * 7 6 4 22 22 H 1.09003 * 117.49719 * 214.97405 * 14 12 2 23 23 H 1.08997 * 117.50032 * 359.97438 * 14 12 2 24 24 H 1.08996 * 109.47045 * 64.81922 * 16 15 12 25 25 H 1.09000 * 109.46682 * 184.81505 * 16 15 12 26 26 H 1.08997 * 109.47029 * 304.81506 * 16 15 12 27 27 H 1.09001 * 109.47443 * 59.99554 * 17 15 12 28 28 H 1.08995 * 109.47361 * 179.97438 * 17 15 12 29 29 H 1.09006 * 109.47065 * 300.00037 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6035 8 14 2.3224 -1.1195 -4.0081 9 1 3.1483 -2.2857 -3.6039 10 1 1.1677 -1.5866 -4.8166 11 1 3.1471 -0.1857 -4.8161 12 6 2.0401 -0.7213 1.2492 13 1 1.4849 -1.6144 1.5359 14 6 3.5491 -0.7162 1.5012 15 6 2.6244 0.1381 2.3721 16 6 2.6545 1.6530 2.1595 17 6 2.3854 -0.3222 3.8114 18 1 -0.3634 -1.0232 -0.0957 19 1 -0.3633 0.4287 0.9339 20 1 -0.3633 0.5945 -0.8383 21 1 0.7082 1.1609 -3.4845 22 1 3.9867 -1.6058 1.9542 23 1 4.1786 -0.1993 0.7769 24 1 1.6343 2.0319 2.1005 25 1 3.1704 2.1268 2.9947 26 1 3.1804 1.8794 1.2320 27 1 2.8172 -1.3130 3.9526 28 1 2.8550 0.3800 4.5002 29 1 1.3137 -0.3618 4.0069 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011889.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = -15.564660 kcal Electronic energy + Delta-G solvation = -9879.534005 eV Core-core repulsion = 8188.010824 eV Total energy + Delta-G solvation = -1691.523181 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.59047 -35.47038 -32.29211 -29.60895 -28.28627 -27.10408 -23.84538 -21.38219 -19.28070 -18.19423 -16.62786 -15.75865 -15.32506 -14.75025 -14.38604 -13.68979 -13.36237 -13.22477 -13.01279 -12.82553 -12.68144 -12.50926 -12.23502 -12.09504 -11.91976 -11.26507 -10.98763 -10.39368 -10.35873 -10.01413 -8.05106 -6.16979 1.39462 1.41334 1.52691 2.44306 3.07961 3.22085 3.99756 4.10690 4.29450 4.36833 4.80804 4.85064 4.86166 5.01510 5.02916 5.11798 5.14376 5.18338 5.20288 5.35350 5.43351 5.53951 5.65740 5.66094 6.07071 6.15037 6.45347 6.94845 7.50094 8.99800 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.068421 B = 0.013825 C = 0.012947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.130812 B = 2024.864751 C = 2162.106096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.063 3.937 3 H 0.010 0.990 4 C -0.518 4.518 5 H 0.049 0.951 6 C 0.008 3.992 7 N -0.921 5.921 8 Si 0.951 3.049 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.281 1.281 12 C -0.135 4.135 13 H 0.084 0.916 14 C -0.170 4.170 15 C -0.134 4.134 16 C -0.105 4.105 17 C -0.104 4.104 18 H 0.022 0.978 19 H 0.027 0.973 20 H 0.050 0.950 21 H 0.259 0.741 22 H 0.098 0.902 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 -1.376 8.455 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.045 3.955 3 H 0.028 0.972 4 C -0.557 4.557 5 H 0.067 0.933 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.777 3.223 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.207 1.207 12 C -0.153 4.153 13 H 0.103 0.897 14 C -0.207 4.207 15 C -0.134 4.134 16 C -0.162 4.162 17 C -0.161 4.161 18 H 0.041 0.959 19 H 0.046 0.954 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.116 0.884 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.695 -1.269 8.326 8.843 hybrid contribution 0.129 -0.341 -1.276 1.327 sum 2.824 -1.611 7.049 7.763 Atomic orbital electron populations 1.21592 0.98739 0.98863 0.98775 1.18292 0.92303 0.94438 0.90479 0.97179 1.21558 1.30290 1.12009 0.91818 0.93295 1.25734 0.95593 0.95839 1.01811 1.70040 1.38195 1.24368 1.23595 0.85617 0.78144 0.78750 0.79821 1.19296 1.20693 1.20741 1.22491 0.95574 1.00213 0.97015 0.89749 1.23063 0.93458 1.01789 1.02343 1.21793 1.04556 0.93657 0.93380 1.21239 1.01123 0.92991 1.00896 1.21296 1.01652 1.01207 0.91976 0.95906 0.95395 0.93128 0.93230 0.88407 0.90991 0.93278 0.90532 0.94496 0.92100 0.90842 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.14 8.89 71.98 0.64 -5.50 15 2 C 0.06 3.25 2.22 -11.54 -0.03 3.22 15 3 H 0.01 0.57 5.97 -2.39 -0.01 0.55 15 4 C -0.52 -29.29 8.35 25.60 0.21 -29.07 15 5 H 0.05 2.75 7.74 -2.91 -0.02 2.73 15 6 C 0.01 0.44 5.30 84.65 0.45 0.89 15 7 N -0.92 -54.60 11.38 21.45 0.24 -54.35 15 8 Si 0.95 44.75 29.54 68.60 2.03 46.78 15 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 12 C -0.13 -5.72 4.73 -10.80 -0.05 -5.77 15 13 H 0.08 3.50 8.14 -2.39 -0.02 3.48 15 14 C -0.17 -6.43 9.31 30.62 0.28 -6.14 15 15 C -0.13 -4.65 2.70 -52.16 -0.14 -4.79 15 16 C -0.11 -3.62 8.47 71.98 0.61 -3.01 15 17 C -0.10 -2.77 9.85 71.98 0.71 -2.06 15 18 H 0.02 1.10 8.14 -2.39 -0.02 1.08 15 19 H 0.03 1.23 8.14 -2.39 -0.02 1.21 15 20 H 0.05 2.80 6.23 -2.38 -0.01 2.79 15 21 H 0.26 14.55 8.31 -92.71 -0.77 13.78 15 22 H 0.10 3.21 8.05 -2.39 -0.02 3.19 15 23 H 0.07 2.98 8.08 -2.39 -0.02 2.96 15 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.08 2.10 8.00 -2.39 -0.02 2.08 15 26 H 0.04 1.42 7.11 -2.39 -0.02 1.40 15 27 H 0.06 1.49 7.90 -2.39 -0.02 1.47 15 28 H 0.07 1.64 7.98 -2.39 -0.02 1.62 15 29 H 0.06 1.50 8.14 -2.38 -0.02 1.48 15 Total: -1.00 -60.45 238.13 6.05 -54.40 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.09 Total: 5.42 kcal Atomic # 6 Polarization: -54.93 SS G_CDS: 2.69 Total: -52.24 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.24 Total: -54.35 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -60.45 6.05 -54.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011889.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.835 kcal (2) G-P(sol) polarization free energy of solvation -60.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds