Wall clock time and date at job start Mon Mar 30 2020 01:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99964 * 2 1 4 4 H 1.48503 * 109.47286 * 270.00043 * 3 2 1 5 5 H 1.48495 * 109.47054 * 30.00288 * 3 2 1 6 6 H 1.48500 * 109.47275 * 150.00428 * 3 2 1 7 7 C 1.37875 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00348 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99640 * 179.97438 * 7 2 1 10 10 H 1.08990 * 115.58913 * 325.78889 * 9 7 2 11 11 C 1.53605 * 117.51438 * 179.97438 * 9 7 2 12 12 H 1.08998 * 117.51108 * 359.97438 * 11 9 7 13 13 C 1.53067 * 115.91965 * 142.53733 * 11 9 7 14 14 C 1.53046 * 109.48504 * 89.03938 * 13 11 9 15 15 O 1.43221 * 108.52854 * 306.97043 * 14 13 11 16 16 C 1.42131 * 113.80590 * 75.14396 * 15 14 13 17 17 C 1.52347 * 110.66788 * 305.63668 * 16 15 14 18 18 H 1.09006 * 114.98789 * 163.09369 * 17 16 15 19 19 H 0.96995 * 119.99557 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47189 * 329.03615 * 13 11 9 21 21 H 1.08998 * 109.46758 * 209.03643 * 13 11 9 22 22 H 1.09000 * 109.62579 * 66.68653 * 14 13 11 23 23 H 1.09001 * 109.62861 * 187.26465 * 14 13 11 24 24 H 1.09002 * 110.53707 * 184.35451 * 16 15 14 25 25 H 1.09000 * 107.59941 * 65.03568 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.9821 -0.3810 -0.5538 11 6 4.2212 -2.5563 -0.0011 12 1 3.5964 -3.4495 -0.0002 13 6 5.4991 -2.6450 -0.8389 14 6 6.7014 -2.2458 0.0199 15 8 6.4357 -0.9675 0.6086 16 6 5.5106 -1.0134 1.6866 17 6 4.2164 -1.6922 1.2560 18 1 3.5771 -2.0255 2.0735 19 1 -0.4849 0.8400 0.0004 20 1 5.4220 -1.9706 -1.6918 21 1 5.6302 -3.6670 -1.1945 22 1 6.8523 -2.9864 0.8052 23 1 7.5927 -2.1832 -0.6044 24 1 5.2892 -0.0076 2.0436 25 1 5.9696 -1.5887 2.4906 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261012277.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:57 Heat of formation + Delta-G solvation = -32.724576 kcal Electronic energy + Delta-G solvation = -9745.540929 eV Core-core repulsion = 7917.440543 eV Total energy + Delta-G solvation = -1828.100385 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.15901 -35.07178 -32.27014 -30.89818 -27.04427 -24.57633 -23.25962 -19.62325 -18.42934 -17.01864 -15.66351 -15.62274 -14.70503 -14.03430 -13.32598 -12.54542 -12.19347 -12.09268 -11.72526 -11.45199 -11.06774 -10.85419 -10.08904 -9.80790 -9.44479 -9.25206 -9.00858 -8.59513 -8.25259 -6.13003 -4.09159 3.30587 3.38555 3.46919 4.32687 4.42209 4.66924 5.24757 5.40190 5.61320 5.66836 5.70142 5.83139 5.92871 6.19583 6.24393 6.47952 6.53436 6.58926 6.73767 7.15862 7.26138 7.68721 7.73301 8.50745 8.90720 9.50211 10.98791 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.064902 B = 0.017155 C = 0.015335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.315745 B = 1631.821062 C = 1825.473631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.491 4.491 8 H 0.074 0.926 9 C 0.006 3.994 10 H 0.069 0.931 11 C -0.170 4.170 12 H 0.093 0.907 13 C -0.118 4.118 14 C 0.063 3.937 15 O -0.388 6.388 16 C 0.098 3.902 17 C -0.222 4.222 18 H 0.100 0.900 19 H 0.266 0.734 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.047 0.953 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.756 -2.241 1.045 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.092 0.908 9 C -0.012 4.012 10 H 0.086 0.914 11 C -0.188 4.188 12 H 0.111 0.889 13 C -0.156 4.156 14 C -0.013 4.013 15 O -0.307 6.307 16 C 0.021 3.979 17 C -0.241 4.241 18 H 0.118 0.882 19 H 0.075 0.925 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.655 -1.948 0.981 10.876 hybrid contribution 0.106 0.497 0.176 0.538 sum 10.761 -1.451 1.157 10.920 Atomic orbital electron populations 1.69907 1.06435 1.27292 1.49727 1.25032 0.94703 0.99395 0.93826 0.86727 0.80622 0.82951 0.78745 1.20206 1.21431 1.18372 1.20607 0.87486 0.94491 1.50184 0.90812 1.20388 0.94778 0.91972 0.94107 0.91358 1.22177 0.98589 0.97557 1.00524 0.88901 1.21643 0.94501 1.00972 0.98500 1.22539 0.97035 0.85700 0.96069 1.87778 1.62496 1.29732 1.50649 1.21763 0.87862 1.00688 0.87543 1.22965 0.99516 1.07200 0.94466 0.88213 0.92456 0.91396 0.91728 0.93447 0.89806 0.89254 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.71 15 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 15 3 Si 0.88 21.96 27.18 -169.99 -4.62 17.34 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 6 H -0.26 -6.28 6.93 56.52 0.39 -5.88 15 7 C -0.49 -14.12 9.76 -34.44 -0.34 -14.45 15 8 H 0.07 2.29 8.06 -52.48 -0.42 1.86 15 9 C 0.01 0.16 4.01 -91.72 -0.37 -0.21 15 10 H 0.07 1.73 6.47 -51.93 -0.34 1.39 15 11 C -0.17 -3.56 6.00 -90.51 -0.54 -4.11 15 12 H 0.09 1.96 8.14 -51.93 -0.42 1.54 15 13 C -0.12 -2.05 6.13 -26.67 -0.16 -2.21 15 14 C 0.06 1.00 6.79 37.18 0.25 1.25 15 15 O -0.39 -7.40 10.57 -35.23 -0.37 -7.77 15 16 C 0.10 1.85 6.78 36.82 0.25 2.10 15 17 C -0.22 -4.78 5.85 -91.45 -0.53 -5.31 15 18 H 0.10 2.18 8.14 -51.93 -0.42 1.76 15 19 H 0.27 7.60 8.31 -40.82 -0.34 7.26 15 20 H 0.07 1.22 8.07 -51.93 -0.42 0.80 15 21 H 0.06 0.95 8.14 -51.93 -0.42 0.52 15 22 H 0.05 0.69 8.02 -51.93 -0.42 0.27 15 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.09 1.67 8.14 -51.93 -0.42 1.25 15 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 LS Contribution 211.42 15.07 3.19 3.19 Total: -1.00 -30.47 211.42 -5.85 -36.32 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -3.28 Total: -1.46 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -1.54 Total: -20.91 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.77 Total: -26.71 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.37 Total: -7.77 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.62 Total: 17.34 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -30.47 -5.85 -36.32 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261012277.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.595 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds