Wall clock time and date at job start Mon Mar 30 2020 01:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99964 * 2 1 4 4 H 1.48503 * 109.47286 * 270.00043 * 3 2 1 5 5 H 1.48495 * 109.47054 * 30.00288 * 3 2 1 6 6 H 1.48500 * 109.47275 * 150.00428 * 3 2 1 7 7 C 1.37875 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00348 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99640 * 179.97438 * 7 2 1 10 10 H 1.08990 * 115.58913 * 325.78889 * 9 7 2 11 11 C 1.53605 * 117.51438 * 179.97438 * 9 7 2 12 12 H 1.08998 * 117.51108 * 359.97438 * 11 9 7 13 13 C 1.53067 * 115.91965 * 142.53733 * 11 9 7 14 14 C 1.53046 * 109.48504 * 89.03938 * 13 11 9 15 15 O 1.43221 * 108.52854 * 306.97043 * 14 13 11 16 16 C 1.42131 * 113.80590 * 75.14396 * 15 14 13 17 17 C 1.52347 * 110.66788 * 305.63668 * 16 15 14 18 18 H 1.09006 * 114.98789 * 163.09369 * 17 16 15 19 19 H 0.96995 * 119.99557 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47189 * 329.03615 * 13 11 9 21 21 H 1.08998 * 109.46758 * 209.03643 * 13 11 9 22 22 H 1.09000 * 109.62579 * 66.68653 * 14 13 11 23 23 H 1.09001 * 109.62861 * 187.26465 * 14 13 11 24 24 H 1.09002 * 110.53707 * 184.35451 * 16 15 14 25 25 H 1.09000 * 107.59941 * 65.03568 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.9821 -0.3810 -0.5538 11 6 4.2212 -2.5563 -0.0011 12 1 3.5964 -3.4495 -0.0002 13 6 5.4991 -2.6450 -0.8389 14 6 6.7014 -2.2458 0.0199 15 8 6.4357 -0.9675 0.6086 16 6 5.5106 -1.0134 1.6866 17 6 4.2164 -1.6922 1.2560 18 1 3.5771 -2.0255 2.0735 19 1 -0.4849 0.8400 0.0004 20 1 5.4220 -1.9706 -1.6918 21 1 5.6302 -3.6670 -1.1945 22 1 6.8523 -2.9864 0.8052 23 1 7.5927 -2.1832 -0.6044 24 1 5.2892 -0.0076 2.0436 25 1 5.9696 -1.5887 2.4906 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261012277.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:57 Heat of formation + Delta-G solvation = -53.190630 kcal Electronic energy + Delta-G solvation = -9746.428403 eV Core-core repulsion = 7917.440543 eV Total energy + Delta-G solvation = -1828.987860 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.68846 -36.72933 -34.41214 -32.31023 -28.93432 -26.31112 -24.69598 -21.53009 -20.01526 -19.06593 -17.19767 -17.06772 -16.51317 -15.63261 -15.05677 -14.46527 -13.94715 -13.56576 -13.32325 -13.01893 -12.86441 -12.69416 -11.81634 -11.53635 -11.39135 -11.04952 -10.81279 -10.39991 -10.04067 -8.36059 -6.36668 1.34380 1.35616 1.51328 2.33620 2.78489 3.00540 3.29407 3.96755 4.15638 4.23846 4.26646 4.38094 4.49236 4.68018 4.80690 4.85810 5.01172 5.09425 5.24215 5.33299 5.52888 5.62454 6.25593 6.33722 6.63857 7.25224 8.79785 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.064902 B = 0.017155 C = 0.015335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.315745 B = 1631.821062 C = 1825.473631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.501 4.501 8 H 0.030 0.970 9 C -0.030 4.030 10 H 0.066 0.934 11 C -0.155 4.155 12 H 0.083 0.917 13 C -0.118 4.118 14 C 0.061 3.939 15 O -0.403 6.403 16 C 0.099 3.901 17 C -0.208 4.208 18 H 0.089 0.911 19 H 0.269 0.731 20 H 0.060 0.940 21 H 0.095 0.905 22 H 0.066 0.934 23 H 0.117 0.883 24 H 0.089 0.911 25 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.571 -1.992 1.269 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.539 4.539 8 H 0.048 0.952 9 C -0.049 4.049 10 H 0.084 0.916 11 C -0.173 4.173 12 H 0.101 0.899 13 C -0.155 4.155 14 C -0.015 4.015 15 O -0.323 6.323 16 C 0.023 3.977 17 C -0.227 4.227 18 H 0.107 0.893 19 H 0.078 0.922 20 H 0.079 0.921 21 H 0.113 0.887 22 H 0.084 0.916 23 H 0.135 0.865 24 H 0.107 0.893 25 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.489 -1.720 1.205 13.652 hybrid contribution -0.802 0.273 0.087 0.851 sum 12.688 -1.447 1.292 12.835 Atomic orbital electron populations 1.70044 1.08282 1.28467 1.51741 1.25946 0.95511 1.03410 0.93549 0.85620 0.79592 0.77964 0.79228 1.19374 1.20751 1.16929 1.20808 0.90037 0.92952 1.50058 0.95199 1.20208 0.92332 0.94701 0.97631 0.91603 1.22314 0.99563 0.95116 1.00356 0.89911 1.21711 0.93105 1.02867 0.97833 1.22805 0.97170 0.84888 0.96674 1.87768 1.62000 1.31718 1.50785 1.21773 0.86524 1.00896 0.88523 1.22964 1.00258 1.06091 0.93379 0.89274 0.92187 0.92135 0.88687 0.91553 0.86509 0.89251 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.96 13.96 21.45 0.30 -59.66 15 2 C 0.01 0.81 5.47 84.65 0.46 1.27 15 3 Si 0.95 45.62 27.18 68.60 1.86 47.49 15 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 15 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 15 6 H -0.25 -11.12 6.93 99.48 0.69 -10.43 15 7 C -0.50 -29.82 9.76 25.60 0.25 -29.57 15 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 15 9 C -0.03 -1.47 4.01 -11.51 -0.05 -1.52 15 10 H 0.07 3.26 6.47 -2.39 -0.02 3.24 15 11 C -0.15 -6.28 6.00 -10.72 -0.06 -6.35 15 12 H 0.08 3.48 8.14 -2.39 -0.02 3.46 15 13 C -0.12 -3.67 6.13 30.63 0.19 -3.48 15 14 C 0.06 1.63 6.79 72.00 0.49 2.12 15 15 O -0.40 -13.75 10.57 -148.98 -1.57 -15.32 15 16 C 0.10 3.41 6.78 71.77 0.49 3.89 15 17 C -0.21 -8.60 5.85 -11.33 -0.07 -8.67 15 18 H 0.09 3.84 8.14 -2.38 -0.02 3.82 15 19 H 0.27 15.83 8.31 -92.71 -0.77 15.06 15 20 H 0.06 2.00 8.07 -2.39 -0.02 1.98 15 21 H 0.09 2.39 8.14 -2.39 -0.02 2.37 15 22 H 0.07 1.57 8.02 -2.39 -0.02 1.55 15 23 H 0.12 2.42 8.14 -2.39 -0.02 2.40 15 24 H 0.09 3.06 8.14 -2.39 -0.02 3.04 15 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 Total: -1.00 -67.01 211.42 3.43 -63.58 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.14 Total: 6.22 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 1.70 Total: -42.30 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.30 Total: -59.66 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -1.57 Total: -15.32 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.86 Total: 47.49 kcal Total: -67.01 3.43 -63.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261012277.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.391 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds