Wall clock time and date at job start Mon Mar 30 2020 02:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47125 * 120.69877 * 2 1 4 4 C 1.53595 * 107.46039 * 222.25730 * 3 2 1 5 5 C 1.52983 * 108.53713 * 300.31284 * 4 3 2 6 6 N 1.45835 * 110.71271 * 49.70028 * 5 4 3 7 7 C 1.30105 * 123.63636 * 339.11487 * 6 5 4 8 8 C 1.41467 * 118.97875 * 180.91909 * 7 6 5 9 9 H 1.07995 * 119.99829 * 172.49191 * 8 7 6 10 10 C 1.40133 * 119.99438 * 352.48455 * 8 7 6 11 11 N 1.30637 * 120.00684 * 6.20930 * 10 8 7 12 12 Si 1.86804 * 119.99632 * 186.21064 * 10 8 7 13 13 H 1.48493 * 109.47437 * 94.98121 * 12 10 8 14 14 H 1.48501 * 109.46860 * 214.98129 * 12 10 8 15 15 H 1.48501 * 109.47163 * 334.97493 * 12 10 8 16 16 H 1.09004 * 109.46834 * 90.00139 * 1 2 3 17 17 H 1.09000 * 109.46743 * 210.00061 * 1 2 3 18 18 H 1.09002 * 109.46944 * 330.00052 * 1 2 3 19 19 H 1.08993 * 109.87273 * 341.77169 * 3 2 1 20 20 H 1.09004 * 109.86976 * 102.75134 * 3 2 1 21 21 H 1.09008 * 109.62263 * 59.93938 * 4 3 2 22 22 H 1.08998 * 109.62724 * 180.51141 * 4 3 2 23 23 H 1.08997 * 109.17706 * 289.39370 * 5 4 3 24 24 H 1.09005 * 109.21196 * 170.01870 * 5 4 3 25 25 H 0.96999 * 120.00318 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2161 1.2651 0.0000 4 6 3.3838 1.1077 -0.9853 5 6 4.2609 -0.0555 -0.5182 6 7 3.4492 -1.2355 -0.2433 7 6 2.1720 -1.1908 0.0005 8 6 1.4839 -2.3962 0.2742 9 1 0.4538 -2.3685 0.5972 10 6 2.1391 -3.6260 0.1260 11 7 3.4164 -3.6572 -0.1463 12 14 1.1860 -5.2211 0.3179 13 1 0.7443 -5.6976 -1.0173 14 1 2.0579 -6.2462 0.9458 15 1 -0.0018 -4.9876 1.1782 16 1 -0.3633 0.0000 -1.0277 17 1 -0.3633 -0.8900 0.5139 18 1 -0.3633 0.8900 0.5138 19 1 1.5681 2.0807 -0.3206 20 1 2.5998 1.4681 0.9999 21 1 2.9960 0.8951 -1.9816 22 1 3.9714 2.0255 -1.0062 23 1 4.7893 0.2365 0.3893 24 1 4.9869 -0.2922 -1.2961 25 1 3.8700 -4.5085 -0.2485 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261020258.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:11 Heat of formation + Delta-G solvation = 32.460031 kcal Electronic energy + Delta-G solvation = -9807.021059 eV Core-core repulsion = 8014.040041 eV Total energy + Delta-G solvation = -1792.981018 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.62432 -33.27453 -32.38513 -30.17461 -26.32534 -25.65044 -22.67963 -21.33157 -18.22285 -15.83262 -15.35417 -14.37990 -14.03404 -13.77527 -13.04773 -12.35246 -12.10343 -11.60534 -11.39354 -11.13538 -10.91499 -10.62866 -10.49695 -10.08837 -9.45769 -9.36996 -8.30235 -6.93705 -6.22422 -5.89874 -4.31371 3.21050 3.29218 3.31254 4.21179 4.53241 4.63868 5.59544 5.76434 5.94283 5.96645 6.06955 6.29247 6.44933 6.54716 6.61243 6.64510 6.95333 7.20926 7.27815 7.66276 7.89721 8.42171 8.59355 9.22797 9.52357 10.73385 10.94893 Molecular weight = 168.10amu Principal moments of inertia in cm(-1) A = 0.063919 B = 0.018146 C = 0.014514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.951663 B = 1542.694733 C = 1928.726797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.677 5.677 3 C 0.134 3.866 4 C -0.163 4.163 5 C 0.076 3.924 6 N -0.627 5.627 7 C 0.480 3.520 8 C -0.482 4.482 9 H 0.075 0.925 10 C 0.084 3.916 11 N -0.729 5.729 12 Si 0.897 3.103 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.267 1.267 16 H 0.023 0.977 17 H 0.069 0.931 18 H 0.035 0.965 19 H 0.052 0.948 20 H 0.037 0.963 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.022 0.978 24 H 0.043 0.957 25 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 4.182 0.015 5.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.405 5.405 3 C 0.009 3.991 4 C -0.203 4.203 5 C -0.056 4.056 6 N -0.361 5.361 7 C 0.227 3.773 8 C -0.522 4.522 9 H 0.093 0.907 10 C -0.139 4.139 11 N -0.355 5.355 12 Si 0.722 3.278 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.191 1.191 16 H 0.041 0.959 17 H 0.088 0.912 18 H 0.053 0.947 19 H 0.071 0.929 20 H 0.056 0.944 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.847 3.628 -0.105 4.613 hybrid contribution -0.823 0.206 -0.028 0.849 sum -3.670 3.833 -0.132 5.308 Atomic orbital electron populations 1.21275 0.82429 1.00652 0.98902 1.47818 1.03923 1.04617 1.84136 1.21213 0.93282 0.87205 0.97433 1.22444 0.98542 1.00127 0.99194 1.21544 0.96888 0.90134 0.96998 1.72709 1.04258 1.20273 1.38849 1.19469 0.86982 0.83126 0.87725 1.18991 0.98496 0.88712 1.46004 0.90718 1.25636 0.94456 0.99628 0.94219 1.70183 1.08402 1.25184 1.31748 0.86528 0.80266 0.82282 0.78720 1.20107 1.20661 1.19117 0.95887 0.91200 0.94663 0.92907 0.94449 0.92667 0.93368 0.95940 0.93904 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.22 10.45 59.85 0.63 2.85 15 2 N -0.68 -16.11 3.27 -180.87 -0.59 -16.71 15 3 C 0.13 2.76 6.63 -3.39 -0.02 2.74 15 4 C -0.16 -3.43 6.24 -26.43 -0.16 -3.59 15 5 C 0.08 1.89 7.18 -4.41 -0.03 1.86 15 6 N -0.63 -18.42 8.14 -60.87 -0.50 -18.92 15 7 C 0.48 13.51 7.18 -156.54 -1.12 12.39 15 8 C -0.48 -13.50 8.67 -37.64 -0.33 -13.82 15 9 H 0.07 1.94 5.79 -52.49 -0.30 1.64 15 10 C 0.08 2.29 5.49 -17.35 -0.10 2.20 15 11 N -0.73 -21.19 11.47 55.55 0.64 -20.56 15 12 Si 0.90 19.94 29.56 -169.99 -5.03 14.92 15 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 16 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 17 H 0.07 1.40 5.80 -51.93 -0.30 1.10 15 18 H 0.03 0.58 8.09 -51.93 -0.42 0.16 15 19 H 0.05 0.92 8.03 -51.93 -0.42 0.51 15 20 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.05 1.21 8.14 -51.92 -0.42 0.78 15 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 24 H 0.04 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.26 6.95 8.29 -40.82 -0.34 6.61 15 LS Contribution 210.45 15.07 3.17 3.17 Total: -1.00 -31.36 210.45 -6.56 -37.92 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: -3.11 Total: -4.45 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.14 Total: 4.62 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.45 Total: -56.18 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -31.36 -6.56 -37.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020258.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.381 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds