Wall clock time and date at job start Mon Mar 30 2020 02:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46898 * 2 1 4 4 C 1.53005 * 109.47147 * 119.99501 * 2 1 3 5 5 C 1.53001 * 109.46577 * 65.00527 * 4 2 1 6 6 H 1.08997 * 115.55450 * 29.32876 * 5 4 2 7 7 C 1.52997 * 117.51528 * 243.62149 * 5 4 2 8 8 C 1.53000 * 60.00347 * 252.52230 * 7 5 4 9 9 H 1.08990 * 117.49990 * 252.50929 * 8 7 5 10 10 C 1.50697 * 117.49504 * 107.48912 * 8 7 5 11 11 H 1.08000 * 120.00322 * 291.37555 * 10 8 7 12 12 C 1.37882 * 120.00141 * 111.37919 * 10 8 7 13 13 N 1.31515 * 119.99787 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00133 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47073 * 90.00245 * 14 12 10 16 16 H 1.48502 * 109.47039 * 210.00154 * 14 12 10 17 17 H 1.48499 * 109.47217 * 329.99962 * 14 12 10 18 18 H 1.09004 * 109.46978 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47389 * 299.99868 * 1 2 3 20 20 H 1.08995 * 109.47253 * 60.00749 * 1 2 3 21 21 H 1.09002 * 109.47389 * 240.00132 * 2 1 3 22 22 H 1.08997 * 109.47251 * 179.97438 * 3 2 1 23 23 H 1.09003 * 109.46940 * 300.00431 * 3 2 1 24 24 H 1.09002 * 109.46993 * 59.99890 * 3 2 1 25 25 H 1.08989 * 109.47384 * 305.00477 * 4 2 1 26 26 H 1.09003 * 109.46956 * 185.00223 * 4 2 1 27 27 H 1.09002 * 117.49910 * 145.03371 * 7 5 4 28 28 H 1.09002 * 117.49884 * 0.02562 * 7 5 4 29 29 H 0.96992 * 120.00090 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 1 1.5393 -2.6153 0.1868 7 6 0.6791 -2.7113 2.2652 8 6 2.1540 -3.1169 2.2938 9 1 2.3992 -4.1430 2.0201 10 6 3.0239 -2.5029 3.3602 11 1 3.2593 -1.4494 3.3248 12 6 3.5194 -3.2860 4.3812 13 7 3.2333 -4.5689 4.4240 14 14 4.5983 -2.5250 5.7026 15 1 3.7469 -2.0430 6.8198 16 1 5.5517 -3.5439 6.2108 17 1 5.3540 -1.3831 5.1279 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 3.1299 1.4426 0.0005 23 1 1.6765 1.9564 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6054 -0.2617 2.1370 26 1 3.1264 -0.6442 1.2952 27 1 -0.0461 -3.4706 1.9726 28 1 0.3378 -2.0003 3.0176 29 1 3.5822 -5.1198 5.1420 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261081402.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:27 Heat of formation + Delta-G solvation = -24.419240 kcal Electronic energy + Delta-G solvation = -9622.365261 eV Core-core repulsion = 7930.458116 eV Total energy + Delta-G solvation = -1691.907144 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.97251 -36.01163 -34.09632 -28.27084 -27.92827 -27.44715 -22.42364 -21.36538 -20.77564 -18.16037 -16.59995 -15.97581 -15.77226 -14.96441 -14.37012 -14.00273 -13.41654 -13.15953 -12.96512 -12.85352 -12.63877 -12.30602 -12.14817 -11.69877 -11.59778 -11.51751 -11.17005 -10.95216 -10.28097 -10.05479 -8.18206 -6.22108 1.40801 1.41357 1.52783 2.40999 3.01398 3.60725 3.96569 4.19465 4.21799 4.50150 4.66435 4.79668 4.81748 4.90159 4.96631 5.00805 5.06980 5.11565 5.24022 5.32668 5.41703 5.53317 5.57834 5.60982 5.75107 5.79845 6.38543 6.85255 7.40140 8.94192 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.060381 B = 0.012432 C = 0.010847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.610962 B = 2251.746308 C = 2580.672652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.143 4.143 4 C -0.063 4.063 5 C -0.154 4.154 6 H 0.091 0.909 7 C -0.200 4.200 8 C -0.014 4.014 9 H 0.040 0.960 10 C -0.502 4.502 11 H 0.064 0.936 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.963 3.037 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.263 1.263 18 H 0.047 0.953 19 H 0.047 0.953 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 9.066 -6.420 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.100 4.100 5 C -0.172 4.172 6 H 0.109 0.891 7 C -0.238 4.238 8 C -0.033 4.033 9 H 0.059 0.941 10 C -0.540 4.540 11 H 0.082 0.918 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.787 3.213 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.187 1.187 18 H 0.066 0.934 19 H 0.066 0.934 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.618 8.912 -6.316 11.232 hybrid contribution 0.412 -0.283 0.890 1.021 sum -2.206 8.628 -5.426 10.429 Atomic orbital electron populations 1.21771 0.94816 1.01507 1.01532 1.21142 0.96398 0.96357 0.97243 1.21812 1.00825 0.95308 1.02045 1.20979 0.99335 0.92266 0.97451 1.22318 1.05442 0.96147 0.93323 0.89104 1.22989 0.95235 1.03565 1.01999 1.19878 0.92475 0.94543 0.96386 0.94142 1.21024 1.29508 0.95340 1.08111 0.91791 1.25936 0.97647 0.95219 1.00408 1.70103 1.46545 1.06553 1.33680 0.85481 0.78513 0.78329 0.78935 1.19929 1.20726 1.18711 0.93398 0.93381 0.91492 0.91370 0.92997 0.91205 0.93038 0.93681 0.93457 0.91053 0.91242 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.01 71.98 0.65 -3.02 15 2 C -0.09 -2.68 2.88 -10.79 -0.03 -2.71 15 3 C -0.14 -3.46 9.19 71.98 0.66 -2.80 15 4 C -0.06 -2.38 3.61 30.60 0.11 -2.26 15 5 C -0.15 -6.58 4.72 -10.79 -0.05 -6.63 15 6 H 0.09 3.57 8.07 -2.39 -0.02 3.55 15 7 C -0.20 -9.28 9.88 30.59 0.30 -8.98 15 8 C -0.01 -0.77 5.58 -11.54 -0.06 -0.83 15 9 H 0.04 2.39 7.90 -2.39 -0.02 2.37 15 10 C -0.50 -28.61 8.71 25.60 0.22 -28.39 15 11 H 0.06 3.52 6.57 -2.91 -0.02 3.50 15 12 C 0.01 0.35 5.46 84.66 0.46 0.81 15 13 N -0.93 -56.63 13.13 21.45 0.28 -56.35 15 14 Si 0.96 44.38 29.54 68.60 2.03 46.41 15 15 H -0.27 -12.25 7.11 99.48 0.71 -11.55 15 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 15 18 H 0.05 1.36 7.38 -2.38 -0.02 1.34 15 19 H 0.05 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.07 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.05 1.26 8.14 -2.39 -0.02 1.24 15 23 H 0.07 1.38 8.14 -2.39 -0.02 1.36 15 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 25 H 0.04 1.79 7.88 -2.39 -0.02 1.77 15 26 H 0.05 1.90 7.73 -2.39 -0.02 1.88 15 27 H 0.07 3.10 8.14 -2.39 -0.02 3.08 15 28 H 0.07 3.25 8.03 -2.39 -0.02 3.24 15 29 H 0.26 15.03 8.31 -92.71 -0.77 14.26 15 Total: -1.00 -61.43 241.90 5.65 -55.78 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.08 Total: 8.97 kcal Atomic # 6 Polarization: -57.07 SS G_CDS: 2.26 Total: -54.81 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.28 Total: -56.35 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -61.43 5.65 -55.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081402.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.363 kcal (2) G-P(sol) polarization free energy of solvation -61.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds