Wall clock time and date at job start Mon Mar 30 2020 02:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47189 * 2 1 4 4 C 1.53003 * 109.47031 * 119.99923 * 2 1 3 5 5 C 1.52997 * 109.47143 * 174.99819 * 4 2 1 6 6 H 1.08999 * 115.54879 * 29.33175 * 5 4 2 7 7 C 1.53069 * 117.53386 * 243.61305 * 5 4 2 8 8 C 1.53000 * 59.98584 * 252.53081 * 7 5 4 9 9 H 1.09002 * 117.49833 * 107.50105 * 8 7 5 10 10 C 1.50697 * 117.50034 * 252.49893 * 8 7 5 11 11 H 1.08004 * 120.00282 * 68.74871 * 10 8 7 12 12 C 1.37879 * 120.00229 * 248.74545 * 10 8 7 13 13 N 1.31519 * 119.99844 * 0.02562 * 12 10 8 14 14 Si 1.86793 * 120.00350 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46947 * 60.00269 * 14 12 10 16 16 H 1.48493 * 109.47427 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47510 * 300.00492 * 14 12 10 18 18 H 1.08996 * 109.47156 * 300.00025 * 1 2 3 19 19 H 1.09000 * 109.47009 * 60.00174 * 1 2 3 20 20 H 1.09002 * 109.47082 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47269 * 239.99543 * 2 1 3 22 22 H 1.09001 * 109.47388 * 59.99616 * 3 2 1 23 23 H 1.09001 * 109.47033 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47003 * 299.99830 * 3 2 1 25 25 H 1.08997 * 109.46940 * 55.00077 * 4 2 1 26 26 H 1.08999 * 109.46929 * 294.99622 * 4 2 1 27 27 H 1.09008 * 117.49334 * 145.04636 * 7 5 4 28 28 H 1.08999 * 117.51639 * 0.02562 * 7 5 4 29 29 H 0.96992 * 120.00167 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 1 4.0719 -0.0353 0.6424 7 6 4.1708 -2.2349 1.1156 8 6 4.2802 -1.4196 2.4057 9 1 3.6645 -1.7290 3.2503 10 6 5.6317 -0.8545 2.7592 11 1 6.0590 -0.0627 2.1617 12 6 6.3228 -1.3481 3.8454 13 7 5.8027 -2.3125 4.5727 14 14 7.9984 -0.6480 4.2831 15 1 7.8689 0.8033 4.5697 16 1 8.5273 -1.3438 5.4836 17 1 8.9307 -0.8464 3.1444 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.6767 1.9564 0.8899 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6054 -1.7198 1.2952 26 1 1.7517 -0.1582 2.1370 27 1 5.0763 -2.3621 0.5223 28 1 3.4831 -3.0806 1.1112 29 1 6.2890 -2.6600 5.3366 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261081415.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:32 Heat of formation + Delta-G solvation = -9.834095 kcal Electronic energy + Delta-G solvation = -9487.515798 eV Core-core repulsion = 7796.241113 eV Total energy + Delta-G solvation = -1691.274685 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.23329 -34.58475 -32.04853 -27.08492 -26.80343 -25.03203 -20.68246 -19.78104 -19.00799 -16.42521 -14.81692 -14.59999 -13.83821 -13.48998 -12.91866 -12.27718 -12.06542 -11.78130 -11.29746 -11.09070 -10.95578 -10.85709 -10.42363 -10.37686 -10.22214 -9.86021 -9.33375 -8.95873 -8.34392 -8.09186 -6.04068 -4.02712 3.32032 3.36377 3.39161 4.41809 5.05632 5.25616 5.29207 5.36379 5.58484 5.87210 6.01115 6.02326 6.11380 6.18086 6.30250 6.41364 6.48172 6.60091 6.78039 6.79564 6.93168 7.00847 7.04865 7.48024 7.70699 7.94360 8.49930 8.98423 9.56533 11.06764 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.081032 B = 0.010235 C = 0.009677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.458006 B = 2735.014110 C = 2892.853009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.075 4.075 5 C -0.191 4.191 6 H 0.086 0.914 7 C -0.211 4.211 8 C 0.035 3.965 9 H 0.074 0.926 10 C -0.495 4.495 11 H 0.057 0.943 12 C 0.065 3.935 13 N -0.889 5.889 14 Si 0.895 3.105 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.276 1.276 18 H 0.051 0.949 19 H 0.047 0.953 20 H 0.050 0.950 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.439 3.861 -6.165 9.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.112 4.112 5 C -0.209 4.209 6 H 0.104 0.896 7 C -0.249 4.249 8 C 0.017 3.983 9 H 0.092 0.908 10 C -0.532 4.532 11 H 0.075 0.925 12 C -0.137 4.137 13 N -0.526 5.526 14 Si 0.723 3.277 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 H 0.070 0.930 19 H 0.066 0.934 20 H 0.069 0.931 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.401 3.743 -5.987 9.530 hybrid contribution 0.925 0.214 0.181 0.967 sum -5.476 3.957 -5.806 8.908 Atomic orbital electron populations 1.21853 0.96214 1.01197 1.01050 1.21091 0.94510 0.96403 0.99265 1.21858 1.01815 0.95963 1.00623 1.21132 0.94771 0.99072 0.96275 1.22408 0.92915 0.96536 1.09032 0.89600 1.23095 1.00925 0.92067 1.08803 1.19931 0.95846 0.95599 0.86965 0.90805 1.20680 1.01455 1.19172 1.11909 0.92507 1.25035 0.98072 0.94761 0.95850 1.69959 1.38269 1.26450 1.17906 0.86607 0.84007 0.79241 0.77864 1.20080 1.21177 1.20135 0.92955 0.93386 0.93066 0.91669 0.92984 0.92036 0.93770 0.92996 0.92599 0.91000 0.91984 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.19 37.16 0.34 -1.52 15 2 C -0.09 -1.43 2.92 -90.62 -0.26 -1.69 15 3 C -0.15 -2.11 9.01 37.16 0.33 -1.77 15 4 C -0.08 -1.37 4.97 -26.73 -0.13 -1.51 15 5 C -0.19 -4.18 5.23 -90.58 -0.47 -4.65 15 6 H 0.09 1.88 6.38 -51.93 -0.33 1.55 15 7 C -0.21 -4.98 9.88 -26.70 -0.26 -5.25 15 8 C 0.04 0.93 5.30 -91.77 -0.49 0.44 15 9 H 0.07 2.10 7.90 -51.93 -0.41 1.69 15 10 C -0.49 -14.20 9.20 -34.44 -0.32 -14.52 15 11 H 0.06 1.60 7.81 -52.48 -0.41 1.19 15 12 C 0.07 1.87 5.46 -17.82 -0.10 1.78 15 13 N -0.89 -26.55 13.13 55.43 0.73 -25.83 15 14 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 15 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 18 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 19 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 15 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.06 0.97 6.40 -51.93 -0.33 0.63 15 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 15 25 H 0.05 0.94 7.88 -51.93 -0.41 0.53 15 26 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 27 H 0.07 1.71 8.14 -51.92 -0.42 1.29 15 28 H 0.06 1.38 8.04 -51.93 -0.42 0.96 15 29 H 0.26 7.38 8.31 -40.82 -0.34 7.05 15 LS Contribution 243.00 15.07 3.66 3.66 Total: -1.00 -29.06 243.00 -6.82 -35.88 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.83 Total: -1.61 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -1.36 Total: -28.69 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.73 Total: -25.83 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.06 -6.82 -35.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081415.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.045 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds