Wall clock time and date at job start Mon Mar 30 2020 02:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47189 * 2 1 4 4 C 1.53003 * 109.47031 * 119.99923 * 2 1 3 5 5 C 1.52997 * 109.47143 * 174.99819 * 4 2 1 6 6 H 1.08999 * 115.54879 * 29.33175 * 5 4 2 7 7 C 1.53069 * 117.53386 * 243.61305 * 5 4 2 8 8 C 1.53000 * 59.98584 * 252.53081 * 7 5 4 9 9 H 1.09002 * 117.49833 * 107.50105 * 8 7 5 10 10 C 1.50697 * 117.50034 * 252.49893 * 8 7 5 11 11 H 1.08004 * 120.00282 * 68.74871 * 10 8 7 12 12 C 1.37879 * 120.00229 * 248.74545 * 10 8 7 13 13 N 1.31519 * 119.99844 * 0.02562 * 12 10 8 14 14 Si 1.86793 * 120.00350 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46947 * 60.00269 * 14 12 10 16 16 H 1.48493 * 109.47427 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47510 * 300.00492 * 14 12 10 18 18 H 1.08996 * 109.47156 * 300.00025 * 1 2 3 19 19 H 1.09000 * 109.47009 * 60.00174 * 1 2 3 20 20 H 1.09002 * 109.47082 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47269 * 239.99543 * 2 1 3 22 22 H 1.09001 * 109.47388 * 59.99616 * 3 2 1 23 23 H 1.09001 * 109.47033 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47003 * 299.99830 * 3 2 1 25 25 H 1.08997 * 109.46940 * 55.00077 * 4 2 1 26 26 H 1.08999 * 109.46929 * 294.99622 * 4 2 1 27 27 H 1.09008 * 117.49334 * 145.04636 * 7 5 4 28 28 H 1.08999 * 117.51639 * 0.02562 * 7 5 4 29 29 H 0.96992 * 120.00167 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 1 4.0719 -0.0353 0.6424 7 6 4.1708 -2.2349 1.1156 8 6 4.2802 -1.4196 2.4057 9 1 3.6645 -1.7290 3.2503 10 6 5.6317 -0.8545 2.7592 11 1 6.0590 -0.0627 2.1617 12 6 6.3228 -1.3481 3.8454 13 7 5.8027 -2.3125 4.5727 14 14 7.9984 -0.6480 4.2831 15 1 7.8689 0.8033 4.5697 16 1 8.5273 -1.3438 5.4836 17 1 8.9307 -0.8464 3.1444 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.6767 1.9564 0.8899 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6054 -1.7198 1.2952 26 1 1.7517 -0.1582 2.1370 27 1 5.0763 -2.3621 0.5223 28 1 3.4831 -3.0806 1.1112 29 1 6.2890 -2.6600 5.3366 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261081415.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:32 Heat of formation + Delta-G solvation = -25.364386 kcal Electronic energy + Delta-G solvation = -9488.189242 eV Core-core repulsion = 7796.241113 eV Total energy + Delta-G solvation = -1691.948129 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.90654 -36.13013 -34.14638 -28.67967 -27.96566 -27.00651 -22.51709 -21.46803 -20.56254 -18.55547 -16.61864 -16.20432 -15.29958 -15.12026 -14.45907 -13.93414 -13.41186 -13.05965 -12.99720 -12.89551 -12.78878 -12.40387 -12.23001 -11.80082 -11.57126 -11.40155 -11.25655 -11.03316 -10.32848 -10.06062 -8.20731 -6.26780 1.39945 1.42632 1.50982 2.39520 2.99094 3.55828 3.94505 4.15131 4.15885 4.52909 4.60882 4.71382 4.80408 4.85768 4.93222 5.03713 5.05417 5.08918 5.19782 5.22531 5.36651 5.49688 5.55412 5.59873 5.68941 5.80434 6.34860 6.80035 7.35837 8.90861 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.081032 B = 0.010235 C = 0.009677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.458006 B = 2735.014110 C = 2892.853009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.073 4.073 5 C -0.158 4.158 6 H 0.088 0.912 7 C -0.205 4.205 8 C -0.008 4.008 9 H 0.044 0.956 10 C -0.517 4.517 11 H 0.056 0.944 12 C 0.011 3.989 13 N -0.927 5.927 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.268 1.268 18 H 0.053 0.947 19 H 0.068 0.932 20 H 0.054 0.946 21 H 0.066 0.934 22 H 0.051 0.949 23 H 0.043 0.957 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 4.770 -7.218 10.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.176 4.176 6 H 0.106 0.894 7 C -0.243 4.243 8 C -0.026 4.026 9 H 0.062 0.938 10 C -0.555 4.555 11 H 0.074 0.926 12 C -0.188 4.188 13 N -0.565 5.565 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.193 1.193 18 H 0.073 0.927 19 H 0.087 0.913 20 H 0.073 0.927 21 H 0.085 0.915 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.701 4.659 -7.055 10.789 hybrid contribution 0.966 -0.081 0.485 1.084 sum -5.736 4.578 -6.570 9.850 Atomic orbital electron populations 1.21808 0.93978 1.01900 1.02201 1.21059 0.96369 0.96248 0.97230 1.21857 1.00685 0.95824 1.01889 1.21148 0.92000 0.99816 0.98094 1.22456 0.95104 0.95343 1.04687 0.89395 1.23070 1.01305 0.93631 1.06308 1.19831 0.95885 0.99211 0.87679 0.93763 1.21030 1.02602 1.19365 1.12473 0.92604 1.25928 1.02151 0.95042 0.95712 1.70088 1.40023 1.27896 1.18507 0.85491 0.78927 0.78772 0.77786 1.19095 1.20569 1.19294 0.92738 0.91339 0.92660 0.91505 0.92982 0.93765 0.91315 0.92773 0.93031 0.91432 0.90677 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.19 71.98 0.66 -2.50 15 2 C -0.09 -2.52 2.92 -10.79 -0.03 -2.55 15 3 C -0.15 -3.87 9.01 71.98 0.65 -3.22 15 4 C -0.07 -2.59 4.97 30.59 0.15 -2.44 15 5 C -0.16 -6.85 5.23 -10.77 -0.06 -6.90 15 6 H 0.09 3.79 6.38 -2.39 -0.02 3.77 15 7 C -0.21 -9.69 9.88 30.62 0.30 -9.38 15 8 C -0.01 -0.41 5.30 -11.54 -0.06 -0.47 15 9 H 0.04 2.63 7.90 -2.39 -0.02 2.61 15 10 C -0.52 -30.16 9.20 25.60 0.24 -29.92 15 11 H 0.06 3.16 7.81 -2.91 -0.02 3.14 15 12 C 0.01 0.61 5.46 84.65 0.46 1.07 15 13 N -0.93 -56.51 13.13 21.45 0.28 -56.23 15 14 Si 0.97 44.50 29.54 68.60 2.03 46.52 15 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 15 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 18 H 0.05 1.19 8.14 -2.39 -0.02 1.17 15 19 H 0.07 1.27 8.14 -2.39 -0.02 1.25 15 20 H 0.05 1.19 8.14 -2.39 -0.02 1.17 15 21 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 22 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.04 1.31 6.40 -2.39 -0.02 1.30 15 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 15 25 H 0.05 1.88 7.88 -2.39 -0.02 1.87 15 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 27 H 0.07 3.21 8.14 -2.38 -0.02 3.19 15 28 H 0.07 3.30 8.04 -2.39 -0.02 3.28 15 29 H 0.26 15.14 8.31 -92.71 -0.77 14.37 15 Total: -1.00 -62.20 243.00 5.71 -56.49 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.08 Total: 9.53 kcal Atomic # 6 Polarization: -58.63 SS G_CDS: 2.31 Total: -56.32 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -62.20 5.71 -56.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081415.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.125 kcal (2) G-P(sol) polarization free energy of solvation -62.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds