Wall clock time and date at job start Mon Mar 30 2020 02:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48497 * 109.47295 * 270.00098 * 3 2 1 5 5 H 1.48497 * 109.47346 * 30.00232 * 3 2 1 6 6 H 1.48503 * 109.47252 * 150.00090 * 3 2 1 7 7 C 1.38813 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00752 * 165.18264 * 7 2 1 9 9 N 1.36947 * 119.99759 * 345.17866 * 7 2 1 10 10 C 1.49381 * 121.59626 * 338.17786 * 9 7 2 11 11 C 1.54236 * 106.08577 * 219.22091 * 10 9 7 12 12 H 1.08997 * 114.87122 * 158.17676 * 11 10 9 13 13 C 1.54310 * 110.78357 * 292.35902 * 11 10 9 14 14 C 1.54316 * 84.89923 * 82.51784 * 13 11 10 15 15 H 1.08998 * 116.22177 * 143.97290 * 14 13 11 16 16 C 1.47702 * 121.56846 * 157.75715 * 9 7 2 17 17 O 1.44739 * 110.75279 * 23.95686 * 11 10 9 18 18 H 0.96999 * 119.99960 * 0.02562 * 1 2 3 19 19 H 1.09003 * 110.90235 * 99.84776 * 10 9 7 20 20 H 1.08991 * 109.83600 * 338.02299 * 10 9 7 21 21 H 1.09006 * 113.96016 * 196.50259 * 13 11 10 22 22 H 1.09000 * 113.96764 * 328.52452 * 13 11 10 23 23 H 1.09009 * 109.96229 * 21.58011 * 16 9 7 24 24 H 1.09001 * 109.96301 * 260.29315 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0633 -1.2177 -0.2397 9 7 1.3597 -2.3685 0.3023 10 6 0.0868 -2.3745 1.0840 11 6 0.1734 -3.5876 2.0326 12 1 -0.4733 -3.5319 2.9082 13 6 0.1317 -4.9090 1.2368 14 6 1.6410 -4.6680 1.0236 15 1 2.2744 -5.5551 1.0191 16 6 1.8788 -3.6799 -0.1364 17 8 1.5533 -3.9497 2.2772 18 1 -0.4850 0.8400 -0.0004 19 1 -0.7744 -2.4789 0.4240 20 1 0.0039 -1.4547 1.6628 21 1 -0.0952 -5.7848 1.8448 22 1 -0.4586 -4.8565 0.3220 23 1 2.9454 -3.6056 -0.3493 24 1 1.3434 -4.0136 -1.0253 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261111271.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:51 Heat of formation + Delta-G solvation = 27.389843 kcal Electronic energy + Delta-G solvation = -10109.987238 eV Core-core repulsion = 8219.067699 eV Total energy + Delta-G solvation = -1890.919539 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.23033 -34.34036 -31.16052 -29.12152 -28.72635 -25.36577 -22.04369 -21.75621 -18.20869 -17.15116 -15.60759 -15.08298 -14.43236 -14.11148 -13.31699 -12.88566 -12.29641 -11.73218 -11.41686 -11.20475 -10.72065 -10.69598 -10.24604 -9.98578 -9.79324 -9.54901 -8.68091 -8.48922 -6.72075 -5.74937 -3.11926 3.41174 3.47425 3.51119 4.37880 4.54908 4.92093 5.34270 5.42028 5.59928 5.72384 5.85349 6.13190 6.18645 6.41198 6.42791 6.64662 6.92537 6.96461 7.29408 7.55255 7.79920 8.35806 9.17872 9.82194 10.40343 11.36006 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.087473 B = 0.016259 C = 0.015343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.023130 B = 1721.699452 C = 1824.492799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.593 5.593 10 C 0.170 3.830 11 C 0.034 3.966 12 H 0.099 0.901 13 C -0.183 4.183 14 C 0.042 3.958 15 H 0.102 0.898 16 C 0.133 3.867 17 O -0.372 6.372 18 H 0.253 0.747 19 H 0.041 0.959 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 -6.919 1.573 7.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.201 4.201 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.045 3.955 11 C -0.025 4.025 12 H 0.117 0.883 13 C -0.221 4.221 14 C -0.017 4.017 15 H 0.119 0.881 16 C 0.006 3.994 17 O -0.290 6.290 18 H 0.063 0.937 19 H 0.059 0.941 20 H 0.102 0.898 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.114 -6.693 1.789 6.929 hybrid contribution 0.239 0.784 -0.131 0.830 sum 0.354 -5.909 1.658 6.148 Atomic orbital electron populations 1.69986 1.05155 1.25413 1.55473 1.24936 0.95465 0.98188 1.01553 0.86206 0.79036 0.83435 0.77589 1.21495 1.21564 1.20548 1.19171 0.92070 0.84175 1.41403 0.91289 1.44590 1.25687 1.00591 1.60977 1.21678 0.88159 0.94430 0.91253 1.24762 0.83908 0.95777 0.98013 0.88343 1.25029 0.97446 0.98731 1.00870 1.24373 0.95461 0.94729 0.87156 0.88068 1.21532 0.98247 0.86741 0.92847 1.89911 1.30365 1.73417 1.35334 0.93661 0.94100 0.89789 0.90425 0.91596 0.92446 0.95411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.06 11.00 55.49 0.61 -26.45 14 2 C 0.00 -0.12 5.08 -17.43 -0.09 -0.21 14 3 Si 0.91 22.40 29.58 -169.99 -5.03 17.37 14 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 14 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 14 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 14 7 C -0.24 -6.89 9.81 -15.05 -0.15 -7.04 14 8 H 0.07 1.94 7.87 -52.49 -0.41 1.53 14 9 N -0.59 -15.79 2.93 -168.38 -0.49 -16.29 14 10 C 0.17 4.23 5.10 -1.79 -0.01 4.22 14 11 C 0.03 0.71 5.90 -25.94 -0.15 0.56 14 12 H 0.10 1.78 8.14 -51.93 -0.42 1.35 14 13 C -0.18 -3.21 7.56 -25.36 -0.19 -3.40 14 14 C 0.04 0.81 5.94 -25.93 -0.15 0.65 14 15 H 0.10 1.60 8.14 -51.93 -0.42 1.18 14 16 C 0.13 2.91 6.64 -2.74 -0.02 2.90 14 17 O -0.37 -8.39 11.87 -35.23 -0.42 -8.81 14 18 H 0.25 7.23 8.31 -40.82 -0.34 6.89 14 19 H 0.04 1.05 8.14 -51.93 -0.42 0.63 14 20 H 0.08 2.31 6.63 -51.93 -0.34 1.97 14 21 H 0.08 1.16 8.14 -51.93 -0.42 0.74 14 22 H 0.07 1.14 8.05 -51.93 -0.42 0.72 14 23 H 0.06 1.22 8.05 -51.92 -0.42 0.80 14 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 14 LS Contribution 202.36 15.07 3.05 3.05 Total: -1.00 -31.39 202.36 -5.88 -37.27 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: -2.84 Total: -3.83 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.76 Total: -2.32 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.12 Total: -42.73 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.42 Total: -8.81 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 3.05 Total: 3.05 kcal Total: -31.39 -5.88 -37.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111271.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.663 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds