Wall clock time and date at job start Mon Mar 30 2020 01:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00582 * 2 1 4 4 H 1.48500 * 109.47357 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47142 * 300.00468 * 3 2 1 6 6 H 1.48512 * 109.46623 * 60.00029 * 3 2 1 7 7 C 1.37880 * 119.99416 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99768 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00198 * 359.97438 * 7 2 1 10 10 H 1.08999 * 115.56290 * 325.77426 * 9 7 2 11 11 C 1.53183 * 117.56615 * 111.62569 * 9 7 2 12 12 C 1.52129 * 59.77804 * 107.40356 * 11 9 7 13 13 C 1.54035 * 121.47280 * 249.14331 * 12 11 9 14 14 C 1.55175 * 101.83227 * 195.70487 * 13 12 11 15 15 O 1.44457 * 103.63515 * 36.32569 * 14 13 12 16 16 C 1.43992 * 107.04763 * 320.43664 * 15 14 13 17 17 H 0.97005 * 119.99740 * 359.97438 * 1 2 3 18 18 H 1.08999 * 117.51991 * 359.97153 * 11 9 7 19 19 H 1.09004 * 117.51777 * 214.83071 * 11 9 7 20 20 H 1.09000 * 110.95544 * 313.83929 * 13 12 11 21 21 H 1.08999 * 110.95825 * 77.56875 * 13 12 11 22 22 H 1.09002 * 110.59250 * 277.79313 * 14 13 12 23 23 H 1.08996 * 110.72507 * 154.92441 * 14 13 12 24 24 H 1.09001 * 109.96954 * 266.94075 * 16 15 14 25 25 H 1.08992 * 109.97857 * 145.66545 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.3118 -2.5000 0.5529 11 6 1.3293 -3.3630 -1.2631 12 6 2.0677 -3.7827 -0.0010 13 6 3.6059 -3.7563 0.0771 14 6 3.8757 -4.6265 1.3332 15 8 2.8581 -5.6496 1.2636 16 6 1.6480 -5.0115 0.8144 17 1 -0.4850 0.8401 0.0004 18 1 1.9258 -2.9871 -2.0943 19 1 0.4416 -3.9319 -1.5400 20 1 4.0492 -4.2060 -0.8113 21 1 3.9715 -2.7396 0.2214 22 1 3.7624 -4.0345 2.2414 23 1 4.8698 -5.0711 1.2882 24 1 1.0497 -4.7026 1.6716 25 1 1.0763 -5.6963 0.1883 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126768.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:55 Heat of formation + Delta-G solvation = -48.545611 kcal Electronic energy + Delta-G solvation = -9618.823696 eV Core-core repulsion = 7790.037259 eV Total energy + Delta-G solvation = -1828.786437 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.54164 -37.09640 -34.26113 -31.04885 -28.67468 -27.04458 -23.55886 -22.47326 -20.20200 -18.28827 -17.12061 -16.97354 -16.18689 -15.88849 -15.03939 -14.29863 -13.83464 -13.40254 -13.30915 -12.93513 -12.72334 -12.32530 -11.98860 -11.67067 -11.41831 -11.04555 -10.67739 -10.36004 -10.08803 -8.21305 -6.26657 1.40569 1.42155 1.54252 2.39128 2.94105 3.07308 3.41286 3.73728 4.16361 4.21525 4.35359 4.60071 4.72306 4.83922 4.86650 4.98965 5.03440 5.04780 5.15097 5.37941 5.54818 5.77323 5.93100 6.31770 6.80515 7.36827 8.90598 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.071369 B = 0.014160 C = 0.012870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.234140 B = 1976.946598 C = 2175.007603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.015 3.985 10 H 0.048 0.952 11 C -0.186 4.186 12 C -0.185 4.185 13 C -0.114 4.114 14 C 0.052 3.948 15 O -0.397 6.397 16 C 0.090 3.910 17 H 0.264 0.736 18 H 0.076 0.924 19 H 0.081 0.919 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.057 0.943 23 H 0.116 0.884 24 H 0.052 0.948 25 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.803 -5.091 0.709 7.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.545 4.545 8 H 0.085 0.915 9 C -0.003 4.003 10 H 0.066 0.934 11 C -0.224 4.224 12 C -0.185 4.185 13 C -0.151 4.151 14 C -0.024 4.024 15 O -0.316 6.316 16 C 0.013 3.987 17 H 0.073 0.927 18 H 0.095 0.905 19 H 0.099 0.901 20 H 0.094 0.906 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.134 0.866 24 H 0.070 0.930 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.680 -5.201 0.772 7.740 hybrid contribution -0.131 1.148 -0.176 1.169 sum 5.549 -4.053 0.596 6.897 Atomic orbital electron populations 1.70101 1.07720 1.27743 1.50852 1.25907 0.95698 1.03008 0.94222 0.85413 0.79151 0.78854 0.77713 1.18518 1.20526 1.20444 1.21047 0.93109 0.90255 1.50059 0.91458 1.19755 0.95577 0.88944 0.96062 0.93372 1.22960 1.01118 1.06064 0.92251 1.22341 0.95150 0.98413 1.02608 1.22482 0.93105 1.00928 0.98631 1.23638 0.92651 0.89105 0.96967 1.88779 1.20992 1.33503 1.88341 1.22468 0.87142 0.92555 0.96524 0.92710 0.90538 0.90105 0.90564 0.90564 0.92444 0.86595 0.93020 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 13.13 21.45 0.28 -54.13 15 2 C 0.01 0.59 5.46 84.66 0.46 1.05 15 3 Si 0.96 42.87 29.54 68.60 2.03 44.90 15 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 6 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 7 C -0.51 -27.71 8.83 25.60 0.23 -27.48 15 8 H 0.07 3.53 5.94 -2.91 -0.02 3.51 15 9 C 0.02 0.78 5.48 -11.76 -0.06 0.71 15 10 H 0.05 2.72 7.90 -2.39 -0.02 2.71 15 11 C -0.19 -8.31 10.01 30.37 0.30 -8.00 15 12 C -0.18 -7.75 2.44 -52.29 -0.13 -7.88 15 13 C -0.11 -4.19 6.74 31.69 0.21 -3.98 15 14 C 0.05 1.67 7.73 72.73 0.56 2.24 15 15 O -0.40 -14.30 11.53 -148.98 -1.72 -16.02 15 16 C 0.09 3.34 7.50 72.09 0.54 3.88 15 17 H 0.26 14.58 8.31 -92.70 -0.77 13.81 15 18 H 0.08 3.42 8.14 -2.39 -0.02 3.40 15 19 H 0.08 3.33 8.14 -2.38 -0.02 3.31 15 20 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15 21 H 0.08 2.99 5.96 -2.39 -0.01 2.97 15 22 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 23 H 0.12 2.90 8.14 -2.39 -0.02 2.89 15 24 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 25 H 0.09 3.02 8.14 -2.39 -0.02 3.00 15 Total: -1.00 -59.98 214.81 3.87 -56.11 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.16 Total: 8.60 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 2.12 Total: -39.45 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.28 Total: -54.13 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -1.72 Total: -16.02 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -59.98 3.87 -56.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126768.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.560 kcal (2) G-P(sol) polarization free energy of solvation -59.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds