Wall clock time and date at job start Mon Mar 30 2020 01:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99886 * 2 1 4 4 H 1.48496 * 109.47018 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47389 * 300.00377 * 3 2 1 6 6 H 1.48499 * 109.47031 * 60.00261 * 3 2 1 7 7 C 1.37879 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99665 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99614 * 359.97438 * 7 2 1 10 10 H 1.08992 * 115.59442 * 325.82024 * 9 7 2 11 11 C 1.53185 * 117.51847 * 111.63645 * 9 7 2 12 12 C 1.52109 * 117.51672 * 180.02562 * 9 7 2 13 13 C 1.53711 * 121.73395 * 141.47807 * 12 9 7 14 14 C 1.54702 * 103.82808 * 216.45363 * 13 12 9 15 15 O 1.44749 * 104.74589 * 336.33535 * 14 13 12 16 16 C 1.44637 * 105.56271 * 39.80310 * 15 14 13 17 17 H 0.96998 * 120.00502 * 359.97438 * 1 2 3 18 18 H 1.09002 * 117.52412 * 0.02562 * 11 9 7 19 19 H 1.08995 * 117.56907 * 214.82342 * 11 9 7 20 20 H 1.09002 * 110.58223 * 335.08123 * 13 12 9 21 21 H 1.08997 * 110.57781 * 97.82551 * 13 12 9 22 22 H 1.09001 * 110.36258 * 95.07389 * 14 13 12 23 23 H 1.08999 * 110.35846 * 217.38800 * 14 13 12 24 24 H 1.08998 * 110.41428 * 201.65461 * 16 15 14 25 25 H 1.08997 * 110.52152 * 79.24791 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.3115 -2.5004 0.5521 11 6 1.3304 -3.3623 -1.2636 12 6 2.0678 -3.7823 -0.0005 13 6 1.6392 -5.0136 0.8137 14 6 2.9763 -5.6111 1.3120 15 8 3.9667 -5.1345 0.3700 16 6 3.6022 -3.7644 0.0838 17 1 -0.4851 0.8400 0.0004 18 1 1.9280 -2.9861 -2.0940 19 1 0.4437 -3.9317 -1.5420 20 1 1.0143 -4.7173 1.6562 21 1 1.1129 -5.7275 0.1802 22 1 3.2029 -5.2494 2.3150 23 1 2.9323 -6.7001 1.3015 24 1 4.0316 -3.4474 -0.8666 25 1 3.9312 -3.1056 0.8874 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126773.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:59 Heat of formation + Delta-G solvation = -49.896149 kcal Electronic energy + Delta-G solvation = -9598.926175 eV Core-core repulsion = 7770.081174 eV Total energy + Delta-G solvation = -1828.845001 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.50330 -37.04946 -34.28396 -31.18159 -28.22505 -27.37552 -23.47448 -22.50067 -20.15288 -18.45445 -17.03701 -16.87490 -16.09028 -15.80614 -15.17613 -14.27891 -14.04913 -13.31570 -13.05497 -12.90550 -12.73230 -12.26101 -12.17250 -11.82256 -11.43135 -11.07698 -10.67057 -10.32636 -10.11660 -8.21873 -6.27547 1.40536 1.42318 1.54627 2.39041 2.90494 3.12448 3.44985 3.76618 4.12691 4.24915 4.32200 4.59009 4.73505 4.82305 4.89449 4.93482 5.03503 5.03789 5.13196 5.37757 5.49228 5.75111 5.91387 6.30464 6.79309 7.36135 8.89836 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.074312 B = 0.013787 C = 0.012627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.696831 B = 2030.451105 C = 2217.023726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.019 3.981 10 H 0.050 0.950 11 C -0.189 4.189 12 C -0.183 4.183 13 C -0.116 4.116 14 C 0.049 3.951 15 O -0.399 6.399 16 C 0.096 3.904 17 H 0.265 0.735 18 H 0.074 0.926 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.115 0.885 24 H 0.081 0.919 25 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 -6.396 1.720 7.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.000 4.000 10 H 0.068 0.932 11 C -0.227 4.227 12 C -0.184 4.184 13 C -0.153 4.153 14 C -0.027 4.027 15 O -0.319 6.319 16 C 0.020 3.980 17 H 0.074 0.926 18 H 0.092 0.908 19 H 0.097 0.903 20 H 0.093 0.907 21 H 0.097 0.903 22 H 0.083 0.917 23 H 0.133 0.867 24 H 0.099 0.901 25 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.087 -6.403 1.642 7.771 hybrid contribution -0.183 1.080 -0.085 1.098 sum 3.904 -5.323 1.557 6.783 Atomic orbital electron populations 1.70086 1.07674 1.27803 1.50699 1.25887 0.95702 1.02968 0.94109 0.85420 0.79099 0.78866 0.77804 1.18690 1.20454 1.20277 1.21005 0.92980 0.90434 1.50309 0.91917 1.19719 0.95614 0.88656 0.95970 0.93151 1.23009 1.01202 1.06217 0.92274 1.22337 0.94592 0.98874 1.02581 1.22363 0.98424 0.95248 0.99288 1.23598 0.85966 1.00621 0.92526 1.89060 1.51318 1.27290 1.64212 1.22539 0.92278 0.82791 1.00431 0.92639 0.90767 0.90272 0.90746 0.90312 0.91653 0.86719 0.90084 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.30 13.13 21.45 0.28 -54.01 15 2 C 0.01 0.70 5.46 84.66 0.46 1.16 15 3 Si 0.96 43.12 29.54 68.60 2.03 45.15 15 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 15 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 7 C -0.51 -28.08 8.86 25.60 0.23 -27.85 15 8 H 0.06 3.34 6.90 -2.91 -0.02 3.32 15 9 C 0.02 0.98 5.47 -11.77 -0.06 0.91 15 10 H 0.05 2.84 7.90 -2.39 -0.02 2.82 15 11 C -0.19 -8.59 10.00 30.38 0.30 -8.28 15 12 C -0.18 -7.75 2.50 -52.28 -0.13 -7.89 15 13 C -0.12 -3.94 6.87 31.41 0.22 -3.72 15 14 C 0.05 1.46 7.68 72.56 0.56 2.02 15 15 O -0.40 -14.68 11.66 -148.98 -1.74 -16.41 15 16 C 0.10 3.83 6.35 72.21 0.46 4.29 15 17 H 0.26 14.59 8.31 -92.71 -0.77 13.82 15 18 H 0.07 3.39 8.14 -2.39 -0.02 3.37 15 19 H 0.08 3.33 8.14 -2.39 -0.02 3.31 15 20 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 21 H 0.08 2.44 8.14 -2.39 -0.02 2.42 15 22 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 23 H 0.11 2.66 8.14 -2.39 -0.02 2.64 15 24 H 0.08 3.21 8.12 -2.39 -0.02 3.19 15 25 H 0.06 2.33 7.88 -2.39 -0.02 2.31 15 Total: -1.00 -60.44 216.79 3.76 -56.68 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.16 Total: 7.96 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 2.03 Total: -39.36 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.28 Total: -54.01 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -1.74 Total: -16.41 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -60.44 3.76 -56.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126773.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.784 kcal (2) G-P(sol) polarization free energy of solvation -60.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds