Wall clock time and date at job start Mon Mar 30 2020 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 119.99985 * 2 1 4 4 H 1.48503 * 109.46963 * 270.00005 * 3 2 1 5 5 H 1.48501 * 109.46947 * 29.99637 * 3 2 1 6 6 H 1.48496 * 109.47250 * 149.99867 * 3 2 1 7 7 C 1.38815 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99890 * 189.10054 * 7 2 1 9 9 N 1.36938 * 120.00144 * 9.10136 * 7 2 1 10 10 C 1.48146 * 127.83468 * 15.57931 * 9 7 2 11 11 C 1.54397 * 104.61474 * 140.39383 * 10 9 7 12 12 H 1.08997 * 117.61571 * 242.76156 * 11 10 9 13 13 C 1.53000 * 118.11970 * 87.19009 * 11 10 9 14 14 H 1.09000 * 117.44473 * 16.10941 * 13 11 10 15 15 N 1.46905 * 117.44056 * 160.80827 * 13 11 10 16 16 C 1.52997 * 60.55518 * 268.45933 * 13 11 10 17 17 H 1.09002 * 119.53704 * 248.23607 * 16 13 11 18 18 C 1.48141 * 127.83925 * 195.55555 * 9 7 2 19 19 H 0.96998 * 119.99988 * 0.02562 * 1 2 3 20 20 H 1.08996 * 110.41422 * 21.61202 * 10 9 7 21 21 H 1.08997 * 110.41243 * 259.17456 * 10 9 7 22 22 H 1.00898 * 110.99692 * 179.97438 * 15 13 11 23 23 H 1.00902 * 110.99755 * 303.95497 * 15 13 11 24 24 H 1.08991 * 110.40969 * 100.82469 * 18 9 7 25 25 H 1.08999 * 110.50524 * 338.43717 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1485 9 7 1.3386 -2.3807 -0.1865 10 6 -0.0340 -2.5711 -0.7103 11 6 0.0642 -3.8171 -1.6167 12 1 -0.1479 -3.6879 -2.6780 13 6 -0.1179 -5.1932 -0.9731 14 1 -0.5678 -5.2281 0.0191 15 7 -0.4529 -6.3160 -1.8592 16 6 1.2865 -4.5974 -1.0899 17 1 2.0101 -5.0553 -1.7643 18 6 1.8198 -3.7546 0.0885 19 1 -0.4850 0.8400 -0.0004 20 1 -0.3432 -1.7021 -1.2912 21 1 -0.7316 -2.7503 0.1077 22 1 -0.5497 -7.1732 -1.3358 23 1 -1.2877 -6.1203 -2.3910 24 1 1.4117 -4.1186 1.0313 25 1 2.9092 -3.7801 0.1117 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261132380.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:14 Heat of formation + Delta-G solvation = 35.957831 kcal Electronic energy + Delta-G solvation = -9624.914912 eV Core-core repulsion = 7832.085571 eV Total energy + Delta-G solvation = -1792.829342 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.30767 -35.91129 -33.62309 -31.22982 -28.91313 -27.28687 -23.15981 -21.37514 -20.86457 -18.85977 -17.08129 -16.47060 -16.36825 -15.35998 -15.30516 -14.62903 -13.88219 -13.29242 -12.99252 -12.79799 -12.64325 -12.05684 -11.97237 -11.78016 -11.11667 -10.88378 -10.56663 -9.59340 -8.93167 -7.93110 -5.30001 1.46175 1.48853 1.57674 2.47059 2.75504 3.15936 3.39119 3.70875 3.92505 4.20658 4.35195 4.45723 4.55246 4.88862 4.97167 5.00279 5.36209 5.43129 5.49199 5.62902 6.15781 6.22129 6.61924 6.99307 7.66118 8.45293 9.21051 Molecular weight = 168.10amu Principal moments of inertia in cm(-1) A = 0.111829 B = 0.012847 C = 0.012071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 250.323293 B = 2178.894198 C = 2319.055021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.984 3.016 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.245 4.245 8 H 0.082 0.918 9 N -0.620 5.620 10 C 0.190 3.810 11 C -0.183 4.183 12 H 0.110 0.890 13 C 0.065 3.935 14 H 0.080 0.920 15 N -0.817 5.817 16 C -0.156 4.156 17 H 0.117 0.883 18 C 0.148 3.852 19 H 0.251 0.749 20 H 0.054 0.946 21 H 0.001 0.999 22 H 0.359 0.641 23 H 0.354 0.646 24 H 0.025 0.975 25 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -8.700 -2.168 8.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.812 3.188 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.345 5.345 10 C 0.064 3.936 11 C -0.203 4.203 12 H 0.128 0.872 13 C -0.048 4.048 14 H 0.098 0.902 15 N -0.350 5.350 16 C -0.177 4.177 17 H 0.135 0.865 18 C 0.023 3.977 19 H 0.060 0.940 20 H 0.073 0.927 21 H 0.018 0.982 22 H 0.174 0.826 23 H 0.169 0.831 24 H 0.043 0.957 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.486 -8.307 -2.473 8.681 hybrid contribution -0.687 0.965 0.591 1.324 sum -0.201 -7.342 -1.882 7.582 Atomic orbital electron populations 1.70104 1.06610 1.25831 1.57132 1.25794 0.96564 1.01430 1.01933 0.85000 0.77737 0.78514 0.77591 1.21142 1.21872 1.19078 1.19436 0.91442 0.83661 1.42781 0.90064 1.45519 1.13890 1.01217 1.73851 1.20808 0.86053 0.93684 0.93093 1.23980 1.05214 0.91377 0.99756 0.87247 1.22075 0.97487 0.89646 0.95564 0.90217 1.58162 1.43932 1.03832 1.29096 1.23900 0.91095 1.01833 1.00878 0.86516 1.21287 0.97775 0.84384 0.94282 0.94047 0.92730 0.98156 0.82644 0.83054 0.95685 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.08 10.86 21.65 0.24 -57.84 15 2 C -0.06 -3.69 5.40 84.86 0.46 -3.23 15 3 Si 0.98 46.12 29.56 68.60 2.03 48.15 15 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 15 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 7 C -0.24 -14.15 10.35 84.03 0.87 -13.28 15 8 H 0.08 4.48 7.84 -2.91 -0.02 4.46 15 9 N -0.62 -33.49 3.38 -688.17 -2.33 -35.82 15 10 C 0.19 9.71 5.70 86.54 0.49 10.20 15 11 C -0.18 -7.33 7.06 -9.89 -0.07 -7.40 15 12 H 0.11 4.20 8.14 -2.39 -0.02 4.19 15 13 C 0.06 2.09 6.66 44.91 0.30 2.39 15 14 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 15 N -0.82 -19.98 9.83 -168.67 -1.66 -21.64 15 16 C -0.16 -5.85 7.06 -9.89 -0.07 -5.92 15 17 H 0.12 4.11 8.14 -2.39 -0.02 4.09 15 18 C 0.15 6.47 7.04 86.54 0.61 7.08 15 19 H 0.25 14.76 8.31 -92.71 -0.77 13.99 15 20 H 0.05 3.14 6.51 -2.39 -0.02 3.13 15 21 H 0.00 0.03 8.14 -2.39 -0.02 0.01 15 22 H 0.36 6.87 9.08 -89.70 -0.81 6.05 15 23 H 0.35 7.54 9.08 -89.69 -0.81 6.73 15 24 H 0.03 1.09 8.14 -2.39 -0.02 1.07 15 25 H 0.06 2.43 8.14 -2.39 -0.02 2.41 15 Total: -1.00 -65.46 213.90 0.44 -65.02 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -0.43 Total: 12.28 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 2.59 Total: -10.16 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -3.75 Total: -115.30 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -65.46 0.44 -65.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132380.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.982 kcal (2) G-P(sol) polarization free energy of solvation -65.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds